miRNA display CGI


Results 121 - 140 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 106871 0.67 0.360657
Target:  5'- gGGCGuCCGCGGCCucGCa-CUCCUGcaGCg -3'
miRNA:   3'- -CCGC-GGCGCCGGccCGagGAGGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 102626 0.67 0.360657
Target:  5'- aGCgGCCuCGGCCGcGGCUUCgUCCgcGGCc -3'
miRNA:   3'- cCG-CGGcGCCGGC-CCGAGG-AGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 39376 0.67 0.360657
Target:  5'- cGGCgGCCGgGGa-GGGCggC-CCUGGCg -3'
miRNA:   3'- -CCG-CGGCgCCggCCCGagGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 37877 0.67 0.360657
Target:  5'- uGGCGgCGCGuGCUGGaGC-CCgagCUGGCc -3'
miRNA:   3'- -CCGCgGCGC-CGGCC-CGaGGag-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 112178 0.67 0.360657
Target:  5'- --gGCCGCGcGCgGGGCUCg--CUGGCc -3'
miRNA:   3'- ccgCGGCGC-CGgCCCGAGgagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 43851 0.67 0.360657
Target:  5'- gGGCGaggaCGCGGCCGcG-UCgUCCUcGGCg -3'
miRNA:   3'- -CCGCg---GCGCCGGCcCgAGgAGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 51444 0.67 0.360657
Target:  5'- cGCGCCGUgaugaucaaccuGGCCGGcGgUCUg-CUGGCg -3'
miRNA:   3'- cCGCGGCG------------CCGGCC-CgAGGagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 51923 0.67 0.360657
Target:  5'- aGCgGCCGCGGCCuGGucccGCUCgUCgCcGGCg -3'
miRNA:   3'- cCG-CGGCGCCGG-CC----CGAGgAG-GaCCG- -5'
23709 3' -66.4 NC_005261.1 + 98196 0.67 0.360657
Target:  5'- gGGCGCgGCGGgcagCGGGCgCCgCCacGGCa -3'
miRNA:   3'- -CCGCGgCGCCg---GCCCGaGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 76123 0.67 0.360657
Target:  5'- cGCGCCGC-GCCGGcGC-CCgucguggaggUCgUGGCg -3'
miRNA:   3'- cCGCGGCGcCGGCC-CGaGG----------AGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 114007 0.67 0.359913
Target:  5'- aGCGUCGCgaaccgcuGGCUGGagaccgaGUUCCcCCUGGCg -3'
miRNA:   3'- cCGCGGCG--------CCGGCC-------CGAGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 1719 0.67 0.357689
Target:  5'- cGCGCgGCGGCaCGGGCaCCgcggugcgcgggcCCaGGCg -3'
miRNA:   3'- cCGCGgCGCCG-GCCCGaGGa------------GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 61513 0.68 0.353268
Target:  5'- cGGCcCCGgcgaGGcCCGGGcCUUCUCC-GGCa -3'
miRNA:   3'- -CCGcGGCg---CC-GGCCC-GAGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 70814 0.68 0.353268
Target:  5'- cGCGCCgGCGGCCccGGGCgcg-CC-GGCg -3'
miRNA:   3'- cCGCGG-CGCCGG--CCCGaggaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 91483 0.68 0.353268
Target:  5'- cGGCGCCgccGCGGCCGccgcccgccccGCgcgCCUgCUGGUc -3'
miRNA:   3'- -CCGCGG---CGCCGGCc----------CGa--GGAgGACCG- -5'
23709 3' -66.4 NC_005261.1 + 95807 0.68 0.353268
Target:  5'- cGGCGCCgGCGG--GGGCUCgCggUCCUcgcGGCg -3'
miRNA:   3'- -CCGCGG-CGCCggCCCGAG-G--AGGA---CCG- -5'
23709 3' -66.4 NC_005261.1 + 106467 0.68 0.353268
Target:  5'- gGGCGUCcaagaGC-GCCGGGCUCCccucgucgcCCUGGa -3'
miRNA:   3'- -CCGCGG-----CGcCGGCCCGAGGa--------GGACCg -5'
23709 3' -66.4 NC_005261.1 + 42207 0.68 0.353268
Target:  5'- cGGCGCCGCGcgggcgccccGCCGcGaGCUCCgCCgcgcGCa -3'
miRNA:   3'- -CCGCGGCGC----------CGGC-C-CGAGGaGGac--CG- -5'
23709 3' -66.4 NC_005261.1 + 74276 0.68 0.353268
Target:  5'- cGCGuCCGCGGCgggcgGGGCggucgCCgCCgGGCa -3'
miRNA:   3'- cCGC-GGCGCCGg----CCCGa----GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 53037 0.68 0.353268
Target:  5'- cGGCGCCGgGGCagccgucgggaGGGCagUgCUCCaccccggGGCg -3'
miRNA:   3'- -CCGCGGCgCCGg----------CCCG--AgGAGGa------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.