miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 71 0.66 0.415327
Target:  5'- cGGCGCgCGCGggggcgggguGCgGGGCgcgCCcCCgGGCc -3'
miRNA:   3'- -CCGCG-GCGC----------CGgCCCGa--GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 125 0.67 0.368154
Target:  5'- cGGCGCCGCccCUGGuGCUCgCggggCUGGCa -3'
miRNA:   3'- -CCGCGGCGccGGCC-CGAG-Gag--GACCG- -5'
23709 3' -66.4 NC_005261.1 + 321 0.67 0.40721
Target:  5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3'
miRNA:   3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 391 0.67 0.383465
Target:  5'- cGGCgGCgGCGGCgGcGGCagCggUCCUGGUc -3'
miRNA:   3'- -CCG-CGgCGCCGgC-CCGagG--AGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 652 0.69 0.291647
Target:  5'- aGCGCCGCGucCCcGGCgCCgagUCCUGGCc -3'
miRNA:   3'- cCGCGGCGCc-GGcCCGaGG---AGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 1179 0.82 0.037039
Target:  5'- cGCGCCGCGGCCGGGg-CCggggCCgGGCg -3'
miRNA:   3'- cCGCGGCGCCGGCCCgaGGa---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 1282 0.75 0.120369
Target:  5'- cGGCGCCcaggcCGGCgGGGCUCCcgucgCCggcGGCg -3'
miRNA:   3'- -CCGCGGc----GCCGgCCCGAGGa----GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 1399 0.76 0.089358
Target:  5'- gGGCGCCGCGGCCgcggcggcggcggGGGCggcgcccgCCUCCagcaccagcGGCg -3'
miRNA:   3'- -CCGCGGCGCCGG-------------CCCGa-------GGAGGa--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 1494 0.75 0.117466
Target:  5'- aGGCcaccGCCGCGGCCGGcaGCUCgUCg-GGCg -3'
miRNA:   3'- -CCG----CGGCGCCGGCC--CGAGgAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 1599 0.68 0.338101
Target:  5'- cGGCGCgGUGGCUGGccgccucGC-CCUCCgcgaaguccGGCu -3'
miRNA:   3'- -CCGCGgCGCCGGCC-------CGaGGAGGa--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 1719 0.67 0.357689
Target:  5'- cGCGCgGCGGCaCGGGCaCCgcggugcgcgggcCCaGGCg -3'
miRNA:   3'- cCGCGgCGCCG-GCCCGaGGa------------GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 1782 0.69 0.304578
Target:  5'- uGGCGCCGCGGCagagccgcaGcGGCggcgCC-CCggGGUa -3'
miRNA:   3'- -CCGCGGCGCCGg--------C-CCGa---GGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 1842 0.67 0.375756
Target:  5'- cGGCGCgCGCGaaggcGCCGGGC-CCgaagacgcgCCgcgaGGCc -3'
miRNA:   3'- -CCGCG-GCGC-----CGGCCCGaGGa--------GGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 2266 0.71 0.211039
Target:  5'- cGGCGCuCGUccucGCCGGGCggcgccgccagcgCCUCCccgGGCa -3'
miRNA:   3'- -CCGCG-GCGc---CGGCCCGa------------GGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 2548 0.73 0.149648
Target:  5'- aGCGCCGCGGCgcugggcgCGGGCgugugguaCUCCccgGGCg -3'
miRNA:   3'- cCGCGGCGCCG--------GCCCGag------GAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 2693 0.72 0.180964
Target:  5'- cGCGCCGgcuuuUGGCCGGcGCcgggCC-CCUGGCc -3'
miRNA:   3'- cCGCGGC-----GCCGGCC-CGa---GGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 2744 0.73 0.145398
Target:  5'- uGCGCCGCGG-CGGGCcgucgcggcgggCCUCgaGGCc -3'
miRNA:   3'- cCGCGGCGCCgGCCCGa-----------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 2791 0.67 0.391277
Target:  5'- gGGCuGCCgccgGCGGCCGGGaggggCCgGGCg -3'
miRNA:   3'- -CCG-CGG----CGCCGGCCCgaggaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 2942 0.84 0.026549
Target:  5'- -cCGCCGCGGCCGGGCUCCggcCCggacuagGGCc -3'
miRNA:   3'- ccGCGGCGCCGGCCCGAGGa--GGa------CCG- -5'
23709 3' -66.4 NC_005261.1 + 2976 0.7 0.267082
Target:  5'- cGgGCUGaGGCUgGGGCUCggCCUGGCg -3'
miRNA:   3'- cCgCGGCgCCGG-CCCGAGgaGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.