miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 3007 0.66 0.415327
Target:  5'- cGGCGCCGgGGCucccgCGGGcCUCC-CCg--- -3'
miRNA:   3'- -CCGCGGCgCCG-----GCCC-GAGGaGGaccg -5'
23709 3' -66.4 NC_005261.1 + 3342 0.71 0.198707
Target:  5'- cGCGCCGCGGCgccCGGcGCgccggCCUUCagGGCc -3'
miRNA:   3'- cCGCGGCGCCG---GCC-CGa----GGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 3565 0.67 0.375756
Target:  5'- cGGCGCCGCuaaGGCgCGcGcGCUCCaCCgcgucgcgGGCc -3'
miRNA:   3'- -CCGCGGCG---CCG-GC-C-CGAGGaGGa-------CCG- -5'
23709 3' -66.4 NC_005261.1 + 3824 0.67 0.391277
Target:  5'- cGCuGCCGCGGgcCCGGGCg----CUGGCg -3'
miRNA:   3'- cCG-CGGCGCC--GGCCCGaggagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 3860 0.66 0.457351
Target:  5'- cGGCGCCgcGCGGCCGGcgagcacggcgcGCagCUC--GGCg -3'
miRNA:   3'- -CCGCGG--CGCCGGCC------------CGagGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 3910 0.74 0.142627
Target:  5'- gGGCGcCCGCGccGCCGGcGCcggCCUCCgGGUa -3'
miRNA:   3'- -CCGC-GGCGC--CGGCC-CGa--GGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 4300 0.66 0.439418
Target:  5'- gGGCcCCGCGGCCGccgcguagcgcgcGGCcgCCUCgCggaucucggGGCa -3'
miRNA:   3'- -CCGcGGCGCCGGC-------------CCGa-GGAG-Ga--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 4389 0.75 0.114909
Target:  5'- aGCGCaCGCGGCCGGGCggcggcggcgcgcugCCgggCCaGGCc -3'
miRNA:   3'- cCGCG-GCGCCGGCCCGa--------------GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 4441 0.66 0.431856
Target:  5'- gGGCGUCaGCaG-CGGGC-CCUCCagcGGCg -3'
miRNA:   3'- -CCGCGG-CGcCgGCCCGaGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 4483 0.67 0.375756
Target:  5'- cGGCGCCGCGGCguagccugcgCGGGCcCCagUcGcGCg -3'
miRNA:   3'- -CCGCGGCGCCG----------GCCCGaGGagGaC-CG- -5'
23709 3' -66.4 NC_005261.1 + 4529 0.84 0.02458
Target:  5'- gGGCGCCGCGGCgaGGGCgCCgggcCCUGGCc -3'
miRNA:   3'- -CCGCGGCGCCGg-CCCGaGGa---GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 4589 0.75 0.106495
Target:  5'- gGGCGCCcccCGGCgccaGGGCUCC-CCUcGGCg -3'
miRNA:   3'- -CCGCGGc--GCCGg---CCCGAGGaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 4749 0.69 0.304578
Target:  5'- cGGUcCC-CGGCuCGGGCUUgggCCUGGCu -3'
miRNA:   3'- -CCGcGGcGCCG-GCCCGAGga-GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 4881 0.7 0.254298
Target:  5'- cGGCcgccucaGCCGCGGCCGccucggcuucggcGGCggcugCCUCCgccgcGGCc -3'
miRNA:   3'- -CCG-------CGGCGCCGGC-------------CCGa----GGAGGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 4959 0.77 0.08314
Target:  5'- aGGCGCCccCGGCCGcGGCgUCCUCUggGGCc -3'
miRNA:   3'- -CCGCGGc-GCCGGC-CCG-AGGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 4995 0.7 0.267082
Target:  5'- gGGCGCCGaGGCCcccGGGCcccccgggUUCUCCgGGUc -3'
miRNA:   3'- -CCGCGGCgCCGG---CCCG--------AGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 5123 0.66 0.431856
Target:  5'- cGGCGCgGgCGGCCcgccGGcGCUCgCgcgCCUcGGCc -3'
miRNA:   3'- -CCGCGgC-GCCGG----CC-CGAG-Ga--GGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 5161 0.77 0.077143
Target:  5'- cGGCggGCCGCgucgagcagGGCCGGGUccUCCUCCgGGCc -3'
miRNA:   3'- -CCG--CGGCG---------CCGGCCCG--AGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 5560 0.66 0.460811
Target:  5'- gGGCGCCcgaGCGGCggagauggGGGCgccgagggcgcccgCCUCgaGGCc -3'
miRNA:   3'- -CCGCGG---CGCCGg-------CCCGa-------------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 5976 0.66 0.448762
Target:  5'- cGGCuccucuGCCGCGcGUCuccGCUCCUCCcgcGGCg -3'
miRNA:   3'- -CCG------CGGCGC-CGGcc-CGAGGAGGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.