miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 20868 0.68 0.311206
Target:  5'- uGCGCCGCgGGCCGGccaucGCcagCUCgUGGCc -3'
miRNA:   3'- cCGCGGCG-CCGGCC-----CGag-GAGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 20928 0.67 0.399193
Target:  5'- --aGCUGCuGGCCaGcGGCaUCCUCCUccGGCu -3'
miRNA:   3'- ccgCGGCG-CCGG-C-CCG-AGGAGGA--CCG- -5'
23709 3' -66.4 NC_005261.1 + 21189 0.66 0.448762
Target:  5'- uGGCGCgagCGCGGCCGcggacgcuGGCcCCggCCgcgacGGCg -3'
miRNA:   3'- -CCGCG---GCGCCGGC--------CCGaGGa-GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 21414 0.66 0.423543
Target:  5'- cGCGCCGCgccGGCCGGuGCaguUCUUCCg--- -3'
miRNA:   3'- cCGCGGCG---CCGGCC-CG---AGGAGGaccg -5'
23709 3' -66.4 NC_005261.1 + 21781 0.72 0.172629
Target:  5'- -cCGCCGCGGCgCGGGCcgCCgcagCCgccGGCc -3'
miRNA:   3'- ccGCGGCGCCG-GCCCGa-GGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 21830 0.66 0.415327
Target:  5'- gGGCGCgcgUGCGGgCGGGCUCgCcCCgcaGCu -3'
miRNA:   3'- -CCGCG---GCGCCgGCCCGAG-GaGGac-CG- -5'
23709 3' -66.4 NC_005261.1 + 23426 0.71 0.203374
Target:  5'- aGGCGCUGCGcGUCgGGGCgccagUCCUCagGGCa -3'
miRNA:   3'- -CCGCGGCGC-CGG-CCCG-----AGGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 23470 0.7 0.249776
Target:  5'- aGGC-CCGCGGCggcgagugcgCGGGC-CCgCCUGGg -3'
miRNA:   3'- -CCGcGGCGCCG----------GCCCGaGGaGGACCg -5'
23709 3' -66.4 NC_005261.1 + 23954 0.67 0.40721
Target:  5'- cGGgGUCGuCGGCaCGcGGUUCCugcuuUCCgGGCg -3'
miRNA:   3'- -CCgCGGC-GCCG-GC-CCGAGG-----AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 24135 0.71 0.217949
Target:  5'- gGGgGCUGggugGGCgGGGCUCa-CCUGGCg -3'
miRNA:   3'- -CCgCGGCg---CCGgCCCGAGgaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 27456 0.68 0.331047
Target:  5'- cGGCGggccgccCCGCgGGgCGGGCaggcCCUCCccgGGCg -3'
miRNA:   3'- -CCGC-------GGCG-CCgGCCCGa---GGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 27904 0.66 0.423543
Target:  5'- cGGcCGCCGCuGCCGaGCUuCCUuCCUcGCg -3'
miRNA:   3'- -CC-GCGGCGcCGGCcCGA-GGA-GGAcCG- -5'
23709 3' -66.4 NC_005261.1 + 28097 0.66 0.431856
Target:  5'- cGCGCCGCaGCaaagGGGUUagaggggggggCCUCgaGGCg -3'
miRNA:   3'- cCGCGGCGcCGg---CCCGA-----------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 28215 0.66 0.423543
Target:  5'- cGCuGCCGCGGCCccaGCUaCCcCCcGGCg -3'
miRNA:   3'- cCG-CGGCGCCGGcc-CGA-GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 28283 0.73 0.160768
Target:  5'- cGcCGCCGCGGCCGcGGUcgUCUCCUucguucgcGGCg -3'
miRNA:   3'- cC-GCGGCGCCGGC-CCGa-GGAGGA--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 28436 0.7 0.233406
Target:  5'- cGCGCacCGCGGCCGgccauGGCgUCUCCcGGCg -3'
miRNA:   3'- cCGCG--GCGCCGGC-----CCGaGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 28755 0.78 0.075238
Target:  5'- aGGaCGCCGCGGCCGGGggCg-CCUGGg -3'
miRNA:   3'- -CC-GCGGCGCCGGCCCgaGgaGGACCg -5'
23709 3' -66.4 NC_005261.1 + 28791 0.68 0.311206
Target:  5'- gGGCGCuCGCGGCCGcGGCggaggcagCCgccgCCgaaGCc -3'
miRNA:   3'- -CCGCG-GCGCCGGC-CCGa-------GGa---GGac-CG- -5'
23709 3' -66.4 NC_005261.1 + 28833 0.76 0.09183
Target:  5'- aGGCgGCCGCGGCUGaGGCggCCgUCgUGGCc -3'
miRNA:   3'- -CCG-CGGCGCCGGC-CCGa-GG-AGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 29091 0.66 0.449617
Target:  5'- gGGgGCCGgGGaCuCGGGgaCCgacgccgaggggagcCCUGGCg -3'
miRNA:   3'- -CCgCGGCgCC-G-GCCCgaGGa--------------GGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.