miRNA display CGI


Results 81 - 100 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 29246 0.71 0.212994
Target:  5'- cGGCGCCGCGcGaCGGGCcgCCgCCgcuggagGGCc -3'
miRNA:   3'- -CCGCGGCGC-CgGCCCGa-GGaGGa------CCG- -5'
23709 3' -66.4 NC_005261.1 + 29342 0.66 0.423543
Target:  5'- uGCGCUucgGCGGCgCGGGCgacaCUCgCgagGGCc -3'
miRNA:   3'- cCGCGG---CGCCG-GCCCGag--GAG-Ga--CCG- -5'
23709 3' -66.4 NC_005261.1 + 29636 0.68 0.317265
Target:  5'- cGGCGCCGCugccgccGGUCGGGgaCg-CCaUGGCc -3'
miRNA:   3'- -CCGCGGCG-------CCGGCCCgaGgaGG-ACCG- -5'
23709 3' -66.4 NC_005261.1 + 29687 0.67 0.399193
Target:  5'- gGGCGCUGCcGCaCGuGGCggCCUgCgUGGCc -3'
miRNA:   3'- -CCGCGGCGcCG-GC-CCGa-GGA-GgACCG- -5'
23709 3' -66.4 NC_005261.1 + 29805 0.7 0.255439
Target:  5'- cGGCGCCgGCGGCgCGGGCgcCCgcgCC-GcGCu -3'
miRNA:   3'- -CCGCGG-CGCCG-GCCCGa-GGa--GGaC-CG- -5'
23709 3' -66.4 NC_005261.1 + 29962 0.67 0.399193
Target:  5'- aGGCGCUagagGCGGCgCGGuGCgCCgCC-GGCg -3'
miRNA:   3'- -CCGCGG----CGCCG-GCC-CGaGGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 30164 0.7 0.249776
Target:  5'- cGGCGCCGCGcccGCCGcGCUgCgcgCCgaGGCg -3'
miRNA:   3'- -CCGCGGCGC---CGGCcCGAgGa--GGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 30266 0.7 0.233406
Target:  5'- cGGCGCgGCGGCCcGcGCgCCcgCCUGGa -3'
miRNA:   3'- -CCGCGgCGCCGGcC-CGaGGa-GGACCg -5'
23709 3' -66.4 NC_005261.1 + 30380 0.73 0.163468
Target:  5'- gGGCGCCGCGGCgCGGGUggagguggaggacaUgCgggCCggGGCa -3'
miRNA:   3'- -CCGCGGCGCCG-GCCCG--------------AgGa--GGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 30875 0.69 0.279764
Target:  5'- gGGgGCCGcCGGCCcugccgcccgagcucGGGCUggggccgcccggccCCUCCcGGCc -3'
miRNA:   3'- -CCgCGGC-GCCGG---------------CCCGA--------------GGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 31175 0.66 0.440263
Target:  5'- aGCGCCGCGGCgCuGGCggCCUaCUGccGCc -3'
miRNA:   3'- cCGCGGCGCCG-GcCCGa-GGAgGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 31778 0.67 0.391277
Target:  5'- cGCGCCGCGGugcugcCCGcGGCgcagugcgCCgcgCgCUGGCc -3'
miRNA:   3'- cCGCGGCGCC------GGC-CCGa-------GGa--G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 31923 0.8 0.047782
Target:  5'- gGGCGCCGCcGCUGGGCUCUgCCgcGGCg -3'
miRNA:   3'- -CCGCGGCGcCGGCCCGAGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 32157 0.69 0.298058
Target:  5'- cGCGCCGCugcGGCCGGuGUaCCUggCCUgcgGGCg -3'
miRNA:   3'- cCGCGGCG---CCGGCC-CGaGGA--GGA---CCG- -5'
23709 3' -66.4 NC_005261.1 + 32207 0.71 0.208136
Target:  5'- uGGCGCCcgacgagcuGcCGGCCGcGGCgguggCCUUCUGcGCg -3'
miRNA:   3'- -CCGCGG---------C-GCCGGC-CCGa----GGAGGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 32316 0.73 0.153274
Target:  5'- cGcCGCCGCGGCCGcGGCgCCcggCgUGGCc -3'
miRNA:   3'- cC-GCGGCGCCGGC-CCGaGGa--GgACCG- -5'
23709 3' -66.4 NC_005261.1 + 32389 0.66 0.415327
Target:  5'- cGGCGCgGCGGCguccCGGaGCgcgugCCgCCgccGGCg -3'
miRNA:   3'- -CCGCGgCGCCG----GCC-CGa----GGaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 33471 0.68 0.345986
Target:  5'- cGcCGCCGCaGCCGGGCcCgCUCgCggGGCc -3'
miRNA:   3'- cC-GCGGCGcCGGCCCGaG-GAG-Ga-CCG- -5'
23709 3' -66.4 NC_005261.1 + 33604 0.7 0.260626
Target:  5'- cGGCGCCggcgcggGCGGCgGGGC-CCggg-GGCg -3'
miRNA:   3'- -CCGCGG-------CGCCGgCCCGaGGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 33749 0.8 0.052884
Target:  5'- cGGCGCCGgGGCCGGGCcCgCUCgCggGGCc -3'
miRNA:   3'- -CCGCGGCgCCGGCCCGaG-GAG-Ga-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.