miRNA display CGI


Results 101 - 120 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 33823 0.73 0.153274
Target:  5'- gGGCgGCCGgggGGCgCGGGC-CC-CCUGGCg -3'
miRNA:   3'- -CCG-CGGCg--CCG-GCCCGaGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 33984 0.68 0.353268
Target:  5'- cGcCGCCGCcccggaGCUGGGCUCCUgCUG-Ca -3'
miRNA:   3'- cC-GCGGCGc-----CGGCCCGAGGAgGACcG- -5'
23709 3' -66.4 NC_005261.1 + 34349 0.68 0.345986
Target:  5'- gGGCgGCCGacggGGCCGGGCgCCgcgcGGCg -3'
miRNA:   3'- -CCG-CGGCg---CCGGCCCGaGGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 34452 0.68 0.345986
Target:  5'- cGCGCCGgGGCaCGGGCcgggggccCCguaCCUgcGGCg -3'
miRNA:   3'- cCGCGGCgCCG-GCCCGa-------GGa--GGA--CCG- -5'
23709 3' -66.4 NC_005261.1 + 34718 0.68 0.345986
Target:  5'- --aGCCucaGCGGUCGGcGC-CC-CCUGGCg -3'
miRNA:   3'- ccgCGG---CGCCGGCC-CGaGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 34922 0.67 0.40721
Target:  5'- gGGCGCgGCcacgcggggggcGGCCGGcGCgacCCgggCCcGGCg -3'
miRNA:   3'- -CCGCGgCG------------CCGGCC-CGa--GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 35012 0.68 0.324791
Target:  5'- uGCGgUGCGGCCGGcGuCUCggUCgCUGGCg -3'
miRNA:   3'- cCGCgGCGCCGGCC-C-GAGg-AG-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 35305 0.75 0.117466
Target:  5'- aGCGCCG-GGCCGGGCUgCUCggGGa -3'
miRNA:   3'- cCGCGGCgCCGGCCCGAgGAGgaCCg -5'
23709 3' -66.4 NC_005261.1 + 35467 0.68 0.317944
Target:  5'- cGGCGCgCGCGcgucCCGGGgUCCcugCCgcGGCa -3'
miRNA:   3'- -CCGCG-GCGCc---GGCCCgAGGa--GGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 35963 0.72 0.185264
Target:  5'- cGGCcagGCCGCucGGCCGcuguagcggcGGCggCUCCUGGCg -3'
miRNA:   3'- -CCG---CGGCG--CCGGC----------CCGagGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 36013 0.71 0.217949
Target:  5'- -uCGCCGCGGCCaaGGCUCUUCCccGCc -3'
miRNA:   3'- ccGCGGCGCCGGc-CCGAGGAGGacCG- -5'
23709 3' -66.4 NC_005261.1 + 36583 0.72 0.180964
Target:  5'- gGGCccGCCGCGGCCaccggggggGGGCagCgCUCCUGcGCc -3'
miRNA:   3'- -CCG--CGGCGCCGG---------CCCGa-G-GAGGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 36916 0.7 0.244216
Target:  5'- cGCGCUG-GGCCGGGaCguaCUCCggGGCc -3'
miRNA:   3'- cCGCGGCgCCGGCCC-Gag-GAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 36951 0.67 0.406403
Target:  5'- uGGCGCaaggcccgccgCGCGGCgcagagcucggugCGGGCUCCagCCggagcccgcgGGCu -3'
miRNA:   3'- -CCGCG-----------GCGCCG-------------GCCCGAGGa-GGa---------CCG- -5'
23709 3' -66.4 NC_005261.1 + 37877 0.67 0.360657
Target:  5'- uGGCGgCGCGuGCUGGaGC-CCgagCUGGCc -3'
miRNA:   3'- -CCGCgGCGC-CGGCC-CGaGGag-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 38555 0.69 0.29548
Target:  5'- cGGCG-CGCGGCCaugcggcGGGUUgagccaauccucucCCUgCUGGCg -3'
miRNA:   3'- -CCGCgGCGCCGG-------CCCGA--------------GGAgGACCG- -5'
23709 3' -66.4 NC_005261.1 + 38929 0.71 0.212994
Target:  5'- cGCGCCaagccgGCGGCCGGGCgggCCgc--GGCg -3'
miRNA:   3'- cCGCGG------CGCCGGCCCGa--GGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 39376 0.67 0.360657
Target:  5'- cGGCgGCCGgGGa-GGGCggC-CCUGGCg -3'
miRNA:   3'- -CCG-CGGCgCCggCCCGagGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 39797 0.72 0.180964
Target:  5'- gGGCGgCGCGGCCGccGGCgCCaggCuCUGGCc -3'
miRNA:   3'- -CCGCgGCGCCGGC--CCGaGGa--G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 40266 0.69 0.285344
Target:  5'- cGGCgGCCGCGGCgGGGCUCaguagacgaUgUGGa -3'
miRNA:   3'- -CCG-CGGCGCCGgCCCGAGga-------GgACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.