miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 138062 0.67 0.383465
Target:  5'- cGGCgGCgGCGGCgGcGGCagCggUCCUGGUc -3'
miRNA:   3'- -CCG-CGgCGCCGgC-CCGagG--AGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 137992 0.67 0.40721
Target:  5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3'
miRNA:   3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 137808 0.67 0.368154
Target:  5'- cGGCGCCGCccCUGGuGCUCgCggggCUGGCa -3'
miRNA:   3'- -CCGCGGCGccGGCC-CGAG-Gag--GACCG- -5'
23709 3' -66.4 NC_005261.1 + 137754 0.66 0.415327
Target:  5'- cGGCGCgCGCGggggcgggguGCgGGGCgcgCCcCCgGGCc -3'
miRNA:   3'- -CCGCG-GCGC----------CGgCCCGa--GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 136616 0.69 0.300653
Target:  5'- cGGCGCgCGCGcGCCgaGGGCggcgggaaggccuggUCCgCCUGGa -3'
miRNA:   3'- -CCGCG-GCGC-CGG--CCCG---------------AGGaGGACCg -5'
23709 3' -66.4 NC_005261.1 + 135065 0.66 0.448762
Target:  5'- cGGCccGCCGCuuuccGGCggCGGGCUCgCggCCcGGCg -3'
miRNA:   3'- -CCG--CGGCG-----CCG--GCCCGAG-Ga-GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 135018 0.68 0.331747
Target:  5'- gGGCccGCaCGCGGCCGcGGCggcgaggCCgacgCCUgcGGCg -3'
miRNA:   3'- -CCG--CG-GCGCCGGC-CCGa------GGa---GGA--CCG- -5'
23709 3' -66.4 NC_005261.1 + 134980 0.72 0.185264
Target:  5'- cGGCGaggaCGgGGCCgccgGGGCgCC-CCUGGCg -3'
miRNA:   3'- -CCGCg---GCgCCGG----CCCGaGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 134865 0.67 0.375756
Target:  5'- aGGCGCC-CGcGCCcccgcGGGCcCCUgCUGuGCg -3'
miRNA:   3'- -CCGCGGcGC-CGG-----CCCGaGGAgGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 134569 0.82 0.036105
Target:  5'- cGGCGCCGCGGCUgcgcaGGGCggg-CCUGGCg -3'
miRNA:   3'- -CCGCGGCGCCGG-----CCCGaggaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 134444 0.68 0.353268
Target:  5'- cGGgGCUGCuGGUgaaGGcGCUCUaCCUGGCc -3'
miRNA:   3'- -CCgCGGCG-CCGg--CC-CGAGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 134216 0.67 0.391277
Target:  5'- gGGuCGCgGCGGCCGGcaGCgUCggCgUGGCg -3'
miRNA:   3'- -CC-GCGgCGCCGGCC--CG-AGgaGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 133846 0.71 0.22505
Target:  5'- cGCGCCGUGGCCGGcGCgcgcgacugccgcgCCUaCCUguGGUc -3'
miRNA:   3'- cCGCGGCGCCGGCC-CGa-------------GGA-GGA--CCG- -5'
23709 3' -66.4 NC_005261.1 + 133353 0.71 0.217949
Target:  5'- cGGCGCUGCcGCgcaGGGCUUCggcugCCUGcGCg -3'
miRNA:   3'- -CCGCGGCGcCGg--CCCGAGGa----GGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 133262 0.7 0.266489
Target:  5'- aGGCGgCGCGcgaguaccagggcGCCGGcGCccgCCUCgUGGCc -3'
miRNA:   3'- -CCGCgGCGC-------------CGGCC-CGa--GGAGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 132900 0.72 0.185264
Target:  5'- gGGCGCCGCGGgCGgcgccgagcggcGGCUCCUgCCcuucuacgUGGUc -3'
miRNA:   3'- -CCGCGGCGCCgGC------------CCGAGGA-GG--------ACCG- -5'
23709 3' -66.4 NC_005261.1 + 132379 0.66 0.423543
Target:  5'- cGCGCuCGCGGCgcuguucccCGaGGCcgCCgccgacgCCUGGCc -3'
miRNA:   3'- cCGCG-GCGCCG---------GC-CCGa-GGa------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 130858 0.83 0.030966
Target:  5'- cGCGCC-CGGCCGGGCgCCgcggCCUGGCc -3'
miRNA:   3'- cCGCGGcGCCGGCCCGaGGa---GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 130582 0.67 0.383465
Target:  5'- aGCGCCGCcG-CGcGGCcCCgcgCCUGGCc -3'
miRNA:   3'- cCGCGGCGcCgGC-CCGaGGa--GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 130419 0.67 0.398396
Target:  5'- cGGCcaggaggagcccgGCCGCGGCgccuaCGuGGuCUCCUacgaCUGGCc -3'
miRNA:   3'- -CCG-------------CGGCGCCG-----GC-CC-GAGGAg---GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.