miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 130243 0.68 0.345986
Target:  5'- aGGCGCCGC-GCCaGcGGCUCgUaCUgcggGGCg -3'
miRNA:   3'- -CCGCGGCGcCGG-C-CCGAGgA-GGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 129682 0.69 0.298058
Target:  5'- gGGCGUCGCgacucgGGCCGGGg-CCggggCCggaGGCa -3'
miRNA:   3'- -CCGCGGCG------CCGGCCCgaGGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 129616 0.69 0.291647
Target:  5'- cGCGgCGgGGUCGGGCgCCUUUgcaGGCg -3'
miRNA:   3'- cCGCgGCgCCGGCCCGaGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 128804 0.71 0.223001
Target:  5'- gGGC-CCGCGGCgGGGCUCgCgCUgcGGCu -3'
miRNA:   3'- -CCGcGGCGCCGgCCCGAG-GaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 128509 0.77 0.081093
Target:  5'- -aCGCgGCGGCgGaGGCagCCUCCUGGCg -3'
miRNA:   3'- ccGCGgCGCCGgC-CCGa-GGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 127887 0.69 0.285344
Target:  5'- cGCGCCgGCGcccGUCGGGC-CCgggCCUGGg -3'
miRNA:   3'- cCGCGG-CGC---CGGCCCGaGGa--GGACCg -5'
23709 3' -66.4 NC_005261.1 + 127804 0.73 0.168591
Target:  5'- cGGCGCCGCGGCggCGGGC-CgCUCgCgcucgcGGCc -3'
miRNA:   3'- -CCGCGGCGCCG--GCCCGaG-GAG-Ga-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 127337 0.68 0.345986
Target:  5'- gGGgGCCggaGCGGCgGGGCgcugggCCcgCgUGGCu -3'
miRNA:   3'- -CCgCGG---CGCCGgCCCGa-----GGa-GgACCG- -5'
23709 3' -66.4 NC_005261.1 + 127264 0.73 0.168591
Target:  5'- aGCGCUaCGGCCGGGC-CCgcccgCCgcgggGGCa -3'
miRNA:   3'- cCGCGGcGCCGGCCCGaGGa----GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 126133 0.67 0.365893
Target:  5'- aGCGCuCGCGGCaagcuucccgaaaaCGgcGGCUCCUCCaccagaGGCc -3'
miRNA:   3'- cCGCG-GCGCCG--------------GC--CCGAGGAGGa-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 126027 0.66 0.415327
Target:  5'- cGCGCCgcGCGGCCGcGcguacgaguGCUCCcgcUCC-GGCg -3'
miRNA:   3'- cCGCGG--CGCCGGC-C---------CGAGG---AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 125898 0.66 0.431856
Target:  5'- aGGCGCCugagccagauguGUGGCgGGGCUCg-CCacGCg -3'
miRNA:   3'- -CCGCGG------------CGCCGgCCCGAGgaGGacCG- -5'
23709 3' -66.4 NC_005261.1 + 125748 0.7 0.233406
Target:  5'- gGGgGCCGgGGCCaGGGCUgCCgcgggCUcGGCu -3'
miRNA:   3'- -CCgCGGCgCCGG-CCCGA-GGa----GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 125677 0.67 0.368154
Target:  5'- cGUGCCGCcgaauggguuuGCCGGGCUUggCCcGGCg -3'
miRNA:   3'- cCGCGGCGc----------CGGCCCGAGgaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 125301 0.68 0.311206
Target:  5'- gGGCGCCGgacccGCgGGcGCUCCgcggCCUcGGCg -3'
miRNA:   3'- -CCGCGGCgc---CGgCC-CGAGGa---GGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 124864 0.67 0.373465
Target:  5'- cGGCGUCGUcgccuucgucgucuGGcCCGGGU---UCCUGGCc -3'
miRNA:   3'- -CCGCGGCG--------------CC-GGCCCGaggAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 124646 0.69 0.298058
Target:  5'- aGGCGCUG-GGCCGcacccGGC-CCUCCaaaauccugGGCa -3'
miRNA:   3'- -CCGCGGCgCCGGC-----CCGaGGAGGa--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 124439 0.74 0.126376
Target:  5'- cGCGCCGCcacaccagccggGGCCGGGUgcCCUCaggGGCg -3'
miRNA:   3'- cCGCGGCG------------CCGGCCCGa-GGAGga-CCG- -5'
23709 3' -66.4 NC_005261.1 + 124022 0.66 0.457351
Target:  5'- -uUGCCGUGuaGCCGGGCgCCUCUgagUGcGCu -3'
miRNA:   3'- ccGCGGCGC--CGGCCCGaGGAGG---AC-CG- -5'
23709 3' -66.4 NC_005261.1 + 123000 0.69 0.278535
Target:  5'- gGGCcacuacgGCCGCGGCCGuGGCgUCCgcgagCgUcGGCa -3'
miRNA:   3'- -CCG-------CGGCGCCGGC-CCG-AGGa----GgA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.