miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 122337 0.69 0.288482
Target:  5'- uGGCGCUcgcagagcucgccugGCGGCCGcGGCUCgCgcggccccaccgcggCCUGGg -3'
miRNA:   3'- -CCGCGG---------------CGCCGGC-CCGAG-Ga--------------GGACCg -5'
23709 3' -66.4 NC_005261.1 + 121809 0.74 0.126376
Target:  5'- gGGCG-CGUGGCUGGGCUCUgcgggCCgccgcGGCg -3'
miRNA:   3'- -CCGCgGCGCCGGCCCGAGGa----GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 121188 0.78 0.066369
Target:  5'- cGGgGCCGgGGCCGGGC-CCggggCCgcgGGCc -3'
miRNA:   3'- -CCgCGGCgCCGGCCCGaGGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 121079 0.78 0.075238
Target:  5'- cGGCGCCgGCGGCCGccaGCgCCUCCaGGCc -3'
miRNA:   3'- -CCGCGG-CGCCGGCc--CGaGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 120595 0.76 0.096492
Target:  5'- uGGCcgucGCCuGCGGCCucggcgccgugGGGCUCCUgCUGGUg -3'
miRNA:   3'- -CCG----CGG-CGCCGG-----------CCCGAGGAgGACCG- -5'
23709 3' -66.4 NC_005261.1 + 120241 0.67 0.40721
Target:  5'- aGCGCCGCuucGCCGcGGCUgCCacgCC-GGCc -3'
miRNA:   3'- cCGCGGCGc--CGGC-CCGA-GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 119127 0.66 0.423543
Target:  5'- --gGCCGCGGCCGcGGCgcggCCaUCUcGGa -3'
miRNA:   3'- ccgCGGCGCCGGC-CCGa---GG-AGGaCCg -5'
23709 3' -66.4 NC_005261.1 + 119053 0.68 0.311206
Target:  5'- cGCGcCCGCGGCCGcGCgugugCUUUCgUGGCc -3'
miRNA:   3'- cCGC-GGCGCCGGCcCGa----GGAGG-ACCG- -5'
23709 3' -66.4 NC_005261.1 + 118922 0.75 0.114628
Target:  5'- cGGCGCCGCGGgCGcGGCgCCgcgcggCUGGCc -3'
miRNA:   3'- -CCGCGGCGCCgGC-CCGaGGag----GACCG- -5'
23709 3' -66.4 NC_005261.1 + 118864 0.67 0.40721
Target:  5'- cGCGcCCGCGGCCcuGGCcucggCCaCCgcgGGCg -3'
miRNA:   3'- cCGC-GGCGCCGGc-CCGa----GGaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 118630 0.7 0.233406
Target:  5'- uGGcCGCCGCGG-CGGcGCUCUgggCCccgGGCc -3'
miRNA:   3'- -CC-GCGGCGCCgGCC-CGAGGa--GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 118495 0.67 0.368154
Target:  5'- cGGCGCUGCGGaCCcuGGCgCCgCUcGGCg -3'
miRNA:   3'- -CCGCGGCGCC-GGc-CCGaGGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 118393 0.72 0.189653
Target:  5'- aGGCGCUgGCGGCCgcGGGCgCCgcagccgCgCUGGCu -3'
miRNA:   3'- -CCGCGG-CGCCGG--CCCGaGGa------G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 118325 0.74 0.123339
Target:  5'- cGCGCUGCuGGCCaugaccugcGGGCUgCUCCUcGGCc -3'
miRNA:   3'- cCGCGGCG-CCGG---------CCCGAgGAGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 118222 0.68 0.311206
Target:  5'- gGGCGCUGaCGGCCGcGGCcgcggCCUacgCCgucugcGGCg -3'
miRNA:   3'- -CCGCGGC-GCCGGC-CCGa----GGA---GGa-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 118162 0.72 0.194134
Target:  5'- uGGcCGUCGCGGCgGGGCUugCCgUCUGGg -3'
miRNA:   3'- -CC-GCGGCGCCGgCCCGA--GGaGGACCg -5'
23709 3' -66.4 NC_005261.1 + 118069 0.69 0.291647
Target:  5'- cGGCagcgGCCGCaGCCGcGCUCgUCUgcUGGCg -3'
miRNA:   3'- -CCG----CGGCGcCGGCcCGAGgAGG--ACCG- -5'
23709 3' -66.4 NC_005261.1 + 117676 0.74 0.135909
Target:  5'- cGCGCC-CGGCCGGGC-CCgcggCgaGGCc -3'
miRNA:   3'- cCGCGGcGCCGGCCCGaGGa---GgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 117355 0.71 0.217949
Target:  5'- aGGCGCCGCccgcaaGGCC--GC-CCUCCUGGa -3'
miRNA:   3'- -CCGCGGCG------CCGGccCGaGGAGGACCg -5'
23709 3' -66.4 NC_005261.1 + 115446 0.8 0.05027
Target:  5'- cGCGCuCGCGGCCGGaCUCCUCCgccucGGUg -3'
miRNA:   3'- cCGCG-GCGCCGGCCcGAGGAGGa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.