miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 115384 0.67 0.40721
Target:  5'- cGGCGUCGUGGUcuucagCGGGUcgUCgaCCgcgGGCg -3'
miRNA:   3'- -CCGCGGCGCCG------GCCCG--AGgaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 115140 0.75 0.111855
Target:  5'- uGGUGUCGUacacgagccgggGGUCGGGCgCCUCCUGcGCg -3'
miRNA:   3'- -CCGCGGCG------------CCGGCCCGaGGAGGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 114007 0.67 0.359913
Target:  5'- aGCGUCGCgaaccgcuGGCUGGagaccgaGUUCCcCCUGGCg -3'
miRNA:   3'- cCGCGGCG--------CCGGCC-------CGAGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 113582 0.69 0.273062
Target:  5'- uGGcCGCCGC-GCUGGGCgaCCUCgCgcccgGGCa -3'
miRNA:   3'- -CC-GCGGCGcCGGCCCGa-GGAG-Ga----CCG- -5'
23709 3' -66.4 NC_005261.1 + 113303 0.66 0.415327
Target:  5'- cGCuGCCGCgGGCCuGGGC-CCggCUGcGCg -3'
miRNA:   3'- cCG-CGGCG-CCGG-CCCGaGGagGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 113139 0.67 0.396807
Target:  5'- cGCGCgGCGGCUGaacguGGagaucgccgagcgcCUgCUCCUGGCc -3'
miRNA:   3'- cCGCGgCGCCGGC-----CC--------------GAgGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 112693 0.68 0.311206
Target:  5'- gGGCGUCGaGGCCGuGC-CCgugcaggaCCUGGCg -3'
miRNA:   3'- -CCGCGGCgCCGGCcCGaGGa-------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 112178 0.67 0.360657
Target:  5'- --gGCCGCGcGCgGGGCUCg--CUGGCc -3'
miRNA:   3'- ccgCGGCGC-CGgCCCGAGgagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 111772 0.69 0.279149
Target:  5'- uGCGCUGCGcGCCcgGGGUgugCCccuggacgCCUGGCu -3'
miRNA:   3'- cCGCGGCGC-CGG--CCCGa--GGa-------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 111244 0.66 0.448762
Target:  5'- ---cCCGCGGCCGGGCccaggCCaCCUGccGCu -3'
miRNA:   3'- ccgcGGCGCCGGCCCGa----GGaGGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 110827 0.66 0.448762
Target:  5'- cGGgGCCGCGGaCGaGuuUCCgcugcccgcCCUGGCg -3'
miRNA:   3'- -CCgCGGCGCCgGC-CcgAGGa--------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 110463 0.67 0.399193
Target:  5'- gGGUGCC-UGGgCGGGCUgCUCUcgUGGa -3'
miRNA:   3'- -CCGCGGcGCCgGCCCGAgGAGG--ACCg -5'
23709 3' -66.4 NC_005261.1 + 110386 0.73 0.160768
Target:  5'- uGGCGCUGCGGCUGGaccGCUUCUacgCCUGccuGCa -3'
miRNA:   3'- -CCGCGGCGCCGGCC---CGAGGA---GGAC---CG- -5'
23709 3' -66.4 NC_005261.1 + 110243 0.73 0.149289
Target:  5'- gGGCGgCGCGGCgcccggggggcugCGGGCcucCCUCgUGGCc -3'
miRNA:   3'- -CCGCgGCGCCG-------------GCCCGa--GGAGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 109879 0.72 0.176752
Target:  5'- gGGC-CCGCGGgCGGGCgCC-CCggGGCu -3'
miRNA:   3'- -CCGcGGCGCCgGCCCGaGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 109811 0.73 0.149648
Target:  5'- cGGCGCCGCuuccGCCGcGGCggccgCCgaaUCUGGCg -3'
miRNA:   3'- -CCGCGGCGc---CGGC-CCGa----GGa--GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 109151 0.69 0.298058
Target:  5'- aGGCGCCacaGCaccaGGCCGGGCaggUUCUCCgcuaGCa -3'
miRNA:   3'- -CCGCGG---CG----CCGGCCCG---AGGAGGac--CG- -5'
23709 3' -66.4 NC_005261.1 + 109005 0.66 0.448762
Target:  5'- cGCGCUGCGcguucaCCGGGCcgaacgCCgCCgUGGCg -3'
miRNA:   3'- cCGCGGCGCc-----GGCCCGa-----GGaGG-ACCG- -5'
23709 3' -66.4 NC_005261.1 + 108746 0.73 0.146099
Target:  5'- cGGCGCCGCGGCgucCGcGGCgcgCCgcgCCacGGCa -3'
miRNA:   3'- -CCGCGGCGCCG---GC-CCGa--GGa--GGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 108259 0.7 0.233406
Target:  5'- -cCGCCGCGGCCaGcGuCUCCacggCCUGGUc -3'
miRNA:   3'- ccGCGGCGCCGGcC-C-GAGGa---GGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.