miRNA display CGI


Results 81 - 100 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 108178 0.77 0.087382
Target:  5'- gGGCG-CGCGGCCGcGGCUCCg---GGCg -3'
miRNA:   3'- -CCGCgGCGCCGGC-CCGAGGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 107885 0.66 0.423543
Target:  5'- cGCGcCCGCGGCCc-GCUUgUCCgcGGCc -3'
miRNA:   3'- cCGC-GGCGCCGGccCGAGgAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 107718 0.66 0.448762
Target:  5'- cGCuGCCGCGGCagGcGGCUgCgCCUcGGCc -3'
miRNA:   3'- cCG-CGGCGCCGg-C-CCGAgGaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 107138 0.69 0.303921
Target:  5'- cGGCgcccacgGCCGCGGCCauggaGGCggccagcgCCUCCgucucGGCg -3'
miRNA:   3'- -CCG-------CGGCGCCGGc----CCGa-------GGAGGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 106871 0.67 0.360657
Target:  5'- gGGCGuCCGCGGCCucGCa-CUCCUGcaGCg -3'
miRNA:   3'- -CCGC-GGCGCCGGccCGagGAGGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 106582 0.8 0.047782
Target:  5'- cGGgGCCGCcGCgCGGcGCUCCUCCUGGa -3'
miRNA:   3'- -CCgCGGCGcCG-GCC-CGAGGAGGACCg -5'
23709 3' -66.4 NC_005261.1 + 106467 0.68 0.353268
Target:  5'- gGGCGUCcaagaGC-GCCGGGCUCCccucgucgcCCUGGa -3'
miRNA:   3'- -CCGCGG-----CGcCGGCCCGAGGa--------GGACCg -5'
23709 3' -66.4 NC_005261.1 + 106218 0.66 0.453905
Target:  5'- aGCGcCCGCGGCCGccuGGCgcggccgccgcgcCCUaCCgGGCc -3'
miRNA:   3'- cCGC-GGCGCCGGC---CCGa------------GGA-GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 105446 0.69 0.291012
Target:  5'- cGCGCCGUacagcgcggacacGGCCGcccucaGCUCCUCggGGCg -3'
miRNA:   3'- cCGCGGCG-------------CCGGCc-----CGAGGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 105225 0.67 0.391277
Target:  5'- cGgGCCGCGGCCGcGGCcgugaUCUgcGGCg -3'
miRNA:   3'- cCgCGGCGCCGGC-CCGagg--AGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 105189 0.66 0.457351
Target:  5'- cGcCGCCGCGGCa-GGCUCgUCCg--- -3'
miRNA:   3'- cC-GCGGCGCCGgcCCGAGgAGGaccg -5'
23709 3' -66.4 NC_005261.1 + 104266 0.66 0.414511
Target:  5'- aGCGCCGCGGUCucggcGGCUgcgcgggCCUCgCaGGCc -3'
miRNA:   3'- cCGCGGCGCCGGc----CCGA-------GGAG-GaCCG- -5'
23709 3' -66.4 NC_005261.1 + 104175 0.73 0.168591
Target:  5'- gGGCGCCGCGcgcgggucGUCGGGCgggacggCgUCCaGGCg -3'
miRNA:   3'- -CCGCGGCGC--------CGGCCCGa------GgAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 103915 0.66 0.441108
Target:  5'- cGCGCCGCcaGGUCGGGCgcggCgUCUgccagacgcugcagcGGCg -3'
miRNA:   3'- cCGCGGCG--CCGGCCCGa---GgAGGa--------------CCG- -5'
23709 3' -66.4 NC_005261.1 + 103877 0.7 0.255439
Target:  5'- gGGCGgCGCcGCCGGGCggcgcgCCaagCCgGGCc -3'
miRNA:   3'- -CCGCgGCGcCGGCCCGa-----GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 103506 0.75 0.111855
Target:  5'- cGGCGCCGCGGacggcggcguCCGcGGCauccgccgCCUCCUcGGCc -3'
miRNA:   3'- -CCGCGGCGCC----------GGC-CCGa-------GGAGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 103458 0.73 0.160768
Target:  5'- cGGcCGCCGCGcccgucGCCaGGGCgUCCagCUGGCg -3'
miRNA:   3'- -CC-GCGGCGC------CGG-CCCG-AGGagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 103391 0.73 0.153274
Target:  5'- cGCGCCGCGGCCGccuGCgCCUCCagcuccgcgcgGGCc -3'
miRNA:   3'- cCGCGGCGCCGGCc--CGaGGAGGa----------CCG- -5'
23709 3' -66.4 NC_005261.1 + 103120 0.68 0.324791
Target:  5'- cGGCGCCaGCGcGcCCGGGUUCUccagcgCCUcGCg -3'
miRNA:   3'- -CCGCGG-CGC-C-GGCCCGAGGa-----GGAcCG- -5'
23709 3' -66.4 NC_005261.1 + 103083 0.7 0.233406
Target:  5'- -cCGCCGCgaaGGCCGGGC-CCagCCcGGCc -3'
miRNA:   3'- ccGCGGCG---CCGGCCCGaGGa-GGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.