miRNA display CGI


Results 101 - 120 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 102957 0.71 0.223001
Target:  5'- cGGCgGCCGCGGgcgccgCGGGCUCCgCCgccGCg -3'
miRNA:   3'- -CCG-CGGCGCCg-----GCCCGAGGaGGac-CG- -5'
23709 3' -66.4 NC_005261.1 + 102728 0.66 0.448762
Target:  5'- cGCGcCCGCcGCCaGGGCgUUCUUCagGGCg -3'
miRNA:   3'- cCGC-GGCGcCGG-CCCG-AGGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 102626 0.67 0.360657
Target:  5'- aGCgGCCuCGGCCGcGGCUUCgUCCgcGGCc -3'
miRNA:   3'- cCG-CGGcGCCGGC-CCGAGG-AGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 102448 0.69 0.287852
Target:  5'- cGCGCCGCccGGCCucGGCgcgcaggcgccggaCCUCCUcGGCg -3'
miRNA:   3'- cCGCGGCG--CCGGc-CCGa-------------GGAGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 102387 0.66 0.439418
Target:  5'- aGCGCgGCGcgcagcuccucgcGCCaGcGCUCCUCCUGccGCu -3'
miRNA:   3'- cCGCGgCGC-------------CGGcC-CGAGGAGGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 102315 0.74 0.126376
Target:  5'- cGCGCCGCGGCCGcGGCgcgcagCCgcgCCagcucGGCc -3'
miRNA:   3'- cCGCGGCGCCGGC-CCGa-----GGa--GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 101788 0.69 0.283474
Target:  5'- cGUGCCGCccGGCgGGGCUgcgcacguacgucaCCUCCUccagcgcgcGGCu -3'
miRNA:   3'- cCGCGGCG--CCGgCCCGA--------------GGAGGA---------CCG- -5'
23709 3' -66.4 NC_005261.1 + 101519 0.66 0.457351
Target:  5'- cGGCGCCcucgucGCGGUCGcGCgCCgCCUcGGCc -3'
miRNA:   3'- -CCGCGG------CGCCGGCcCGaGGaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 100828 0.69 0.298058
Target:  5'- uGCGCCGCccaGGCCGGGagcucggCgaCCUGcGCg -3'
miRNA:   3'- cCGCGGCG---CCGGCCCga-----GgaGGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 100312 0.7 0.261208
Target:  5'- cGCGUCGCGGgCGcGCUCgauCUCCaGGCg -3'
miRNA:   3'- cCGCGGCGCCgGCcCGAG---GAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 99481 0.71 0.207656
Target:  5'- uGGcCGCUGCGGCCaGcGCcgccgcgUCCUCCgagGGCc -3'
miRNA:   3'- -CC-GCGGCGCCGGcC-CG-------AGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 99241 0.67 0.391277
Target:  5'- cGGCGUCGCGcccGCCGGGCcgcguaUCaaacagCCgcaGGCa -3'
miRNA:   3'- -CCGCGGCGC---CGGCCCG------AGga----GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 98697 0.73 0.168591
Target:  5'- aGGCGCgGCcggagcuggGGCCGGGgUCCggCCUugggGGCa -3'
miRNA:   3'- -CCGCGgCG---------CCGGCCCgAGGa-GGA----CCG- -5'
23709 3' -66.4 NC_005261.1 + 98669 0.66 0.448762
Target:  5'- aGGCGa---GGgCGGGCUCCgCCggGGCc -3'
miRNA:   3'- -CCGCggcgCCgGCCCGAGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 98550 0.67 0.391277
Target:  5'- uGCGcCCGCGaaauccGgCGGGCggccgUCCUCCgcgGGCu -3'
miRNA:   3'- cCGC-GGCGC------CgGCCCG-----AGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 98456 0.7 0.235536
Target:  5'- cGGCGCCcgcaaaauccgacggGCGGCCG---UCCUCCgcgGGCu -3'
miRNA:   3'- -CCGCGG---------------CGCCGGCccgAGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 98295 0.68 0.324791
Target:  5'- cGCGuCCGCGGCCucggGGGCgggcgCCgccgCCagcGGCg -3'
miRNA:   3'- cCGC-GGCGCCGG----CCCGa----GGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 98196 0.67 0.360657
Target:  5'- gGGCGCgGCGGgcagCGGGCgCCgCCacGGCa -3'
miRNA:   3'- -CCGCGgCGCCg---GCCCGaGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 97764 0.7 0.233406
Target:  5'- cGGCGgCGCGGCCGGcaucgaCUCCcgagCCccgGGCc -3'
miRNA:   3'- -CCGCgGCGCCGGCCc-----GAGGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 97671 0.66 0.423543
Target:  5'- cGGCGuCCGCGGggcUUGGGCggggCUgCCggGGCg -3'
miRNA:   3'- -CCGC-GGCGCC---GGCCCGa---GGaGGa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.