Results 1 - 20 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23709 | 3' | -66.4 | NC_005261.1 | + | 4529 | 0.84 | 0.02458 |
Target: 5'- gGGCGCCGCGGCgaGGGCgCCgggcCCUGGCc -3' miRNA: 3'- -CCGCGGCGCCGg-CCCGaGGa---GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 79611 | 0.66 | 0.452187 |
Target: 5'- gGGCGCagggcuccacgagcuCGCGGCCcGGCagcagcucguugUCCUCgccgagCUGGCc -3' miRNA: 3'- -CCGCG---------------GCGCCGGcCCG------------AGGAG------GACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 29091 | 0.66 | 0.449617 |
Target: 5'- gGGgGCCGgGGaCuCGGGgaCCgacgccgaggggagcCCUGGCg -3' miRNA: 3'- -CCgCGGCgCC-G-GCCCgaGGa--------------GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 135065 | 0.66 | 0.448762 |
Target: 5'- cGGCccGCCGCuuuccGGCggCGGGCUCgCggCCcGGCg -3' miRNA: 3'- -CCG--CGGCG-----CCG--GCCCGAG-Ga-GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 110827 | 0.66 | 0.448762 |
Target: 5'- cGGgGCCGCGGaCGaGuuUCCgcugcccgcCCUGGCg -3' miRNA: 3'- -CCgCGGCGCCgGC-CcgAGGa--------GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 109005 | 0.66 | 0.448762 |
Target: 5'- cGCGCUGCGcguucaCCGGGCcgaacgCCgCCgUGGCg -3' miRNA: 3'- cCGCGGCGCc-----GGCCCGa-----GGaGG-ACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 107718 | 0.66 | 0.448762 |
Target: 5'- cGCuGCCGCGGCagGcGGCUgCgCCUcGGCc -3' miRNA: 3'- cCG-CGGCGCCGg-C-CCGAgGaGGA-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 102728 | 0.66 | 0.448762 |
Target: 5'- cGCGcCCGCcGCCaGGGCgUUCUUCagGGCg -3' miRNA: 3'- cCGC-GGCGcCGG-CCCG-AGGAGGa-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 52965 | 0.66 | 0.448762 |
Target: 5'- aGCGCCGC-GCCGGuGCggcgCCggCaGGCg -3' miRNA: 3'- cCGCGGCGcCGGCC-CGa---GGagGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 106218 | 0.66 | 0.453905 |
Target: 5'- aGCGcCCGCGGCCGccuGGCgcggccgccgcgcCCUaCCgGGCc -3' miRNA: 3'- cCGC-GGCGCCGGC---CCGa------------GGA-GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 17738 | 0.66 | 0.457351 |
Target: 5'- cGGCGCU-CGGagCGGGCggaCUUCUGGg -3' miRNA: 3'- -CCGCGGcGCCg-GCCCGag-GAGGACCg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 55164 | 0.66 | 0.457351 |
Target: 5'- aGCGCCGCcGCCGGcgGCUCg-CggGGCg -3' miRNA: 3'- cCGCGGCGcCGGCC--CGAGgaGgaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 105189 | 0.66 | 0.457351 |
Target: 5'- cGcCGCCGCGGCa-GGCUCgUCCg--- -3' miRNA: 3'- cC-GCGGCGCCGgcCCGAGgAGGaccg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 58794 | 0.66 | 0.457351 |
Target: 5'- aGCGCgCGCaggaaGGCCGGcacGCgccgcgccacgUCCUCCaGGCa -3' miRNA: 3'- cCGCG-GCG-----CCGGCC---CG-----------AGGAGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 46243 | 0.66 | 0.457351 |
Target: 5'- cGCGUCGCaGGCCGcGGCggcggCCgcgaccgugUCCccggGGCg -3' miRNA: 3'- cCGCGGCG-CCGGC-CCGa----GG---------AGGa---CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 3860 | 0.66 | 0.457351 |
Target: 5'- cGGCGCCgcGCGGCCGGcgagcacggcgcGCagCUC--GGCg -3' miRNA: 3'- -CCGCGG--CGCCGGCC------------CGagGAGgaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 124022 | 0.66 | 0.457351 |
Target: 5'- -uUGCCGUGuaGCCGGGCgCCUCUgagUGcGCu -3' miRNA: 3'- ccGCGGCGC--CGGCCCGaGGAGG---AC-CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 101519 | 0.66 | 0.457351 |
Target: 5'- cGGCGCCcucgucGCGGUCGcGCgCCgCCUcGGCc -3' miRNA: 3'- -CCGCGG------CGCCGGCcCGaGGaGGA-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 73225 | 0.66 | 0.457351 |
Target: 5'- gGGCGCgGUGGCCGcGaGCgcgagcaggUCCUCC--GCg -3' miRNA: 3'- -CCGCGgCGCCGGC-C-CG---------AGGAGGacCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 71971 | 0.66 | 0.457351 |
Target: 5'- gGGCGCggagcgCGCGGCaGGuGCgcagcgucgCC-CCUGGCc -3' miRNA: 3'- -CCGCG------GCGCCGgCC-CGa--------GGaGGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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