Results 41 - 60 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23709 | 3' | -66.4 | NC_005261.1 | + | 124022 | 0.66 | 0.457351 |
Target: 5'- -uUGCCGUGuaGCCGGGCgCCUCUgagUGcGCu -3' miRNA: 3'- ccGCGGCGC--CGGCCCGaGGAGG---AC-CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 3860 | 0.66 | 0.457351 |
Target: 5'- cGGCGCCgcGCGGCCGGcgagcacggcgcGCagCUC--GGCg -3' miRNA: 3'- -CCGCGG--CGCCGGCC------------CGagGAGgaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 46243 | 0.66 | 0.457351 |
Target: 5'- cGCGUCGCaGGCCGcGGCggcggCCgcgaccgugUCCccggGGCg -3' miRNA: 3'- cCGCGGCG-CCGGC-CCGa----GG---------AGGa---CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 58794 | 0.66 | 0.457351 |
Target: 5'- aGCGCgCGCaggaaGGCCGGcacGCgccgcgccacgUCCUCCaGGCa -3' miRNA: 3'- cCGCG-GCG-----CCGGCC---CG-----------AGGAGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 105189 | 0.66 | 0.457351 |
Target: 5'- cGcCGCCGCGGCa-GGCUCgUCCg--- -3' miRNA: 3'- cC-GCGGCGCCGgcCCGAGgAGGaccg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 135065 | 0.66 | 0.448762 |
Target: 5'- cGGCccGCCGCuuuccGGCggCGGGCUCgCggCCcGGCg -3' miRNA: 3'- -CCG--CGGCG-----CCG--GCCCGAG-Ga-GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 110827 | 0.66 | 0.448762 |
Target: 5'- cGGgGCCGCGGaCGaGuuUCCgcugcccgcCCUGGCg -3' miRNA: 3'- -CCgCGGCGCCgGC-CcgAGGa--------GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 103915 | 0.66 | 0.441108 |
Target: 5'- cGCGCCGCcaGGUCGGGCgcggCgUCUgccagacgcugcagcGGCg -3' miRNA: 3'- cCGCGGCG--CCGGCCCGa---GgAGGa--------------CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 96331 | 0.66 | 0.446202 |
Target: 5'- uGGCcuGgCGCGGCCGcGCgcaCCUgacgcccugacuggCCUGGCg -3' miRNA: 3'- -CCG--CgGCGCCGGCcCGa--GGA--------------GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 21189 | 0.66 | 0.448762 |
Target: 5'- uGGCGCgagCGCGGCCGcggacgcuGGCcCCggCCgcgacGGCg -3' miRNA: 3'- -CCGCG---GCGCCGGC--------CCGaGGa-GGa----CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 46041 | 0.66 | 0.448762 |
Target: 5'- gGGCGCgGUagaggguccagGGCagcgggaaGGGCgccgCCUCgUGGCc -3' miRNA: 3'- -CCGCGgCG-----------CCGg-------CCCGa---GGAGgACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 89022 | 0.66 | 0.448762 |
Target: 5'- gGGCGCCGUGGacgugacgaCGcGCuUCCUgCUGGa -3' miRNA: 3'- -CCGCGGCGCCg--------GCcCG-AGGAgGACCg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 90388 | 0.66 | 0.448762 |
Target: 5'- aGGCcCCGcCGGCgGGGCUggcgCCcGGCg -3' miRNA: 3'- -CCGcGGC-GCCGgCCCGAgga-GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 98669 | 0.66 | 0.448762 |
Target: 5'- aGGCGa---GGgCGGGCUCCgCCggGGCc -3' miRNA: 3'- -CCGCggcgCCgGCCCGAGGaGGa-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 111244 | 0.66 | 0.448762 |
Target: 5'- ---cCCGCGGCCGGGCccaggCCaCCUGccGCu -3' miRNA: 3'- ccgcGGCGCCGGCCCGa----GGaGGAC--CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 5976 | 0.66 | 0.448762 |
Target: 5'- cGGCuccucuGCCGCGcGUCuccGCUCCUCCcgcGGCg -3' miRNA: 3'- -CCG------CGGCGC-CGGcc-CGAGGAGGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 52965 | 0.66 | 0.448762 |
Target: 5'- aGCGCCGC-GCCGGuGCggcgCCggCaGGCg -3' miRNA: 3'- cCGCGGCGcCGGCC-CGa---GGagGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 102728 | 0.66 | 0.448762 |
Target: 5'- cGCGcCCGCcGCCaGGGCgUUCUUCagGGCg -3' miRNA: 3'- cCGC-GGCGcCGG-CCCG-AGGAGGa-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 107718 | 0.66 | 0.448762 |
Target: 5'- cGCuGCCGCGGCagGcGGCUgCgCCUcGGCc -3' miRNA: 3'- cCG-CGGCGCCGg-C-CCGAgGaGGA-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 109005 | 0.66 | 0.448762 |
Target: 5'- cGCGCUGCGcguucaCCGGGCcgaacgCCgCCgUGGCg -3' miRNA: 3'- cCGCGGCGCc-----GGCCCGa-----GGaGG-ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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