Results 61 - 80 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23709 | 3' | -66.4 | NC_005261.1 | + | 52965 | 0.66 | 0.448762 |
Target: 5'- aGCGCCGC-GCCGGuGCggcgCCggCaGGCg -3' miRNA: 3'- cCGCGGCGcCGGCC-CGa---GGagGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 5976 | 0.66 | 0.448762 |
Target: 5'- cGGCuccucuGCCGCGcGUCuccGCUCCUCCcgcGGCg -3' miRNA: 3'- -CCG------CGGCGC-CGGcc-CGAGGAGGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 102387 | 0.66 | 0.439418 |
Target: 5'- aGCGCgGCGcgcagcuccucgcGCCaGcGCUCCUCCUGccGCu -3' miRNA: 3'- cCGCGgCGC-------------CGGcC-CGAGGAGGAC--CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 4300 | 0.66 | 0.439418 |
Target: 5'- gGGCcCCGCGGCCGccgcguagcgcgcGGCcgCCUCgCggaucucggGGCa -3' miRNA: 3'- -CCGcGGCGCCGGC-------------CCGa-GGAG-Ga--------CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 10702 | 0.66 | 0.439418 |
Target: 5'- aGGCGuUCGCGGgccgccuCCGGGCcccccucuUCCUCCgccGCc -3' miRNA: 3'- -CCGC-GGCGCC-------GGCCCG--------AGGAGGac-CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 72625 | 0.66 | 0.437731 |
Target: 5'- gGGCGCagggGCGGCUuuauaguccccuggGGGCcgCCUCg-GGCc -3' miRNA: 3'- -CCGCGg---CGCCGG--------------CCCGa-GGAGgaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 80257 | 0.66 | 0.431856 |
Target: 5'- -cCGCCGCGcGCCaGGUacgUCUCCaGGCc -3' miRNA: 3'- ccGCGGCGC-CGGcCCGa--GGAGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 28097 | 0.66 | 0.431856 |
Target: 5'- cGCGCCGCaGCaaagGGGUUagaggggggggCCUCgaGGCg -3' miRNA: 3'- cCGCGGCGcCGg---CCCGA-----------GGAGgaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 5123 | 0.66 | 0.431856 |
Target: 5'- cGGCGCgGgCGGCCcgccGGcGCUCgCgcgCCUcGGCc -3' miRNA: 3'- -CCGCGgC-GCCGG----CC-CGAG-Ga--GGA-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 56287 | 0.66 | 0.431856 |
Target: 5'- uGGCGCCGCuguucGCCGccacGGCcucccgCCUgcuacugacgagCCUGGCg -3' miRNA: 3'- -CCGCGGCGc----CGGC----CCGa-----GGA------------GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 87064 | 0.66 | 0.440263 |
Target: 5'- aGCGCCaccGCGGCCGGGC-CCagCacGUa -3' miRNA: 3'- cCGCGG---CGCCGGCCCGaGGagGacCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 31175 | 0.66 | 0.440263 |
Target: 5'- aGCGCCGCGGCgCuGGCggCCUaCUGccGCc -3' miRNA: 3'- cCGCGGCGCCG-GcCCGa-GGAgGAC--CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 111244 | 0.66 | 0.448762 |
Target: 5'- ---cCCGCGGCCGGGCccaggCCaCCUGccGCu -3' miRNA: 3'- ccgcGGCGCCGGCCCGa----GGaGGAC--CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 98669 | 0.66 | 0.448762 |
Target: 5'- aGGCGa---GGgCGGGCUCCgCCggGGCc -3' miRNA: 3'- -CCGCggcgCCgGCCCGAGGaGGa-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 90388 | 0.66 | 0.448762 |
Target: 5'- aGGCcCCGcCGGCgGGGCUggcgCCcGGCg -3' miRNA: 3'- -CCGcGGC-GCCGgCCCGAgga-GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 89022 | 0.66 | 0.448762 |
Target: 5'- gGGCGCCGUGGacgugacgaCGcGCuUCCUgCUGGa -3' miRNA: 3'- -CCGCGGCGCCg--------GCcCG-AGGAgGACCg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 46041 | 0.66 | 0.448762 |
Target: 5'- gGGCGCgGUagaggguccagGGCagcgggaaGGGCgccgCCUCgUGGCc -3' miRNA: 3'- -CCGCGgCG-----------CCGg-------CCCGa---GGAGgACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 21189 | 0.66 | 0.448762 |
Target: 5'- uGGCGCgagCGCGGCCGcggacgcuGGCcCCggCCgcgacGGCg -3' miRNA: 3'- -CCGCG---GCGCCGGC--------CCGaGGa-GGa----CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 96331 | 0.66 | 0.446202 |
Target: 5'- uGGCcuGgCGCGGCCGcGCgcaCCUgacgcccugacuggCCUGGCg -3' miRNA: 3'- -CCG--CgGCGCCGGCcCGa--GGA--------------GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 103915 | 0.66 | 0.441108 |
Target: 5'- cGCGCCGCcaGGUCGGGCgcggCgUCUgccagacgcugcagcGGCg -3' miRNA: 3'- cCGCGGCG--CCGGCCCGa---GgAGGa--------------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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