miRNA display CGI


Results 81 - 100 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 61034 0.66 0.43102
Target:  5'- cGGCaCCGCGGCagcuggcuggugcUGGGCcuggagcacuUCUUCCUgccGGCg -3'
miRNA:   3'- -CCGcGGCGCCG-------------GCCCG----------AGGAGGA---CCG- -5'
23709 3' -66.4 NC_005261.1 + 97671 0.66 0.423543
Target:  5'- cGGCGuCCGCGGggcUUGGGCggggCUgCCggGGCg -3'
miRNA:   3'- -CCGC-GGCGCC---GGCCCGa---GGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 28215 0.66 0.423543
Target:  5'- cGCuGCCGCGGCCccaGCUaCCcCCcGGCg -3'
miRNA:   3'- cCG-CGGCGCCGGcc-CGA-GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 21414 0.66 0.423543
Target:  5'- cGCGCCGCgccGGCCGGuGCaguUCUUCCg--- -3'
miRNA:   3'- cCGCGGCG---CCGGCC-CG---AGGAGGaccg -5'
23709 3' -66.4 NC_005261.1 + 132379 0.66 0.423543
Target:  5'- cGCGCuCGCGGCgcuguucccCGaGGCcgCCgccgacgCCUGGCc -3'
miRNA:   3'- cCGCG-GCGCCG---------GC-CCGa-GGa------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 107885 0.66 0.423543
Target:  5'- cGCGcCCGCGGCCc-GCUUgUCCgcGGCc -3'
miRNA:   3'- cCGC-GGCGCCGGccCGAGgAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 59443 0.66 0.423543
Target:  5'- aGGCGCCggcagcagcGCGGCCGcGGCgUCggggGGCa -3'
miRNA:   3'- -CCGCGG---------CGCCGGC-CCGaGGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 56287 0.66 0.431856
Target:  5'- uGGCGCCGCuguucGCCGccacGGCcucccgCCUgcuacugacgagCCUGGCg -3'
miRNA:   3'- -CCGCGGCGc----CGGC----CCGa-----GGA------------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 5123 0.66 0.431856
Target:  5'- cGGCGCgGgCGGCCcgccGGcGCUCgCgcgCCUcGGCc -3'
miRNA:   3'- -CCGCGgC-GCCGG----CC-CGAG-Ga--GGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 28097 0.66 0.431856
Target:  5'- cGCGCCGCaGCaaagGGGUUagaggggggggCCUCgaGGCg -3'
miRNA:   3'- cCGCGGCGcCGg---CCCGA-----------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 21189 0.66 0.448762
Target:  5'- uGGCGCgagCGCGGCCGcggacgcuGGCcCCggCCgcgacGGCg -3'
miRNA:   3'- -CCGCG---GCGCCGGC--------CCGaGGa-GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 96331 0.66 0.446202
Target:  5'- uGGCcuGgCGCGGCCGcGCgcaCCUgacgcccugacuggCCUGGCg -3'
miRNA:   3'- -CCG--CgGCGCCGGCcCGa--GGA--------------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 103915 0.66 0.441108
Target:  5'- cGCGCCGCcaGGUCGGGCgcggCgUCUgccagacgcugcagcGGCg -3'
miRNA:   3'- cCGCGGCG--CCGGCCCGa---GgAGGa--------------CCG- -5'
23709 3' -66.4 NC_005261.1 + 31175 0.66 0.440263
Target:  5'- aGCGCCGCGGCgCuGGCggCCUaCUGccGCc -3'
miRNA:   3'- cCGCGGCGCCG-GcCCGa-GGAgGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 87064 0.66 0.440263
Target:  5'- aGCGCCaccGCGGCCGGGC-CCagCacGUa -3'
miRNA:   3'- cCGCGG---CGCCGGCCCGaGGagGacCG- -5'
23709 3' -66.4 NC_005261.1 + 102387 0.66 0.439418
Target:  5'- aGCGCgGCGcgcagcuccucgcGCCaGcGCUCCUCCUGccGCu -3'
miRNA:   3'- cCGCGgCGC-------------CGGcC-CGAGGAGGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 4300 0.66 0.439418
Target:  5'- gGGCcCCGCGGCCGccgcguagcgcgcGGCcgCCUCgCggaucucggGGCa -3'
miRNA:   3'- -CCGcGGCGCCGGC-------------CCGa-GGAG-Ga--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 10702 0.66 0.439418
Target:  5'- aGGCGuUCGCGGgccgccuCCGGGCcccccucuUCCUCCgccGCc -3'
miRNA:   3'- -CCGC-GGCGCC-------GGCCCG--------AGGAGGac-CG- -5'
23709 3' -66.4 NC_005261.1 + 72625 0.66 0.437731
Target:  5'- gGGCGCagggGCGGCUuuauaguccccuggGGGCcgCCUCg-GGCc -3'
miRNA:   3'- -CCGCGg---CGCCGG--------------CCCGa-GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 80257 0.66 0.431856
Target:  5'- -cCGCCGCGcGCCaGGUacgUCUCCaGGCc -3'
miRNA:   3'- ccGCGGCGC-CGGcCCGa--GGAGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.