miRNA display CGI


Results 101 - 120 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 137754 0.66 0.415327
Target:  5'- cGGCGCgCGCGggggcgggguGCgGGGCgcgCCcCCgGGCc -3'
miRNA:   3'- -CCGCG-GCGC----------CGgCCCGa--GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 126027 0.66 0.415327
Target:  5'- cGCGCCgcGCGGCCGcGcguacgaguGCUCCcgcUCC-GGCg -3'
miRNA:   3'- cCGCGG--CGCCGGC-C---------CGAGG---AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 113303 0.66 0.415327
Target:  5'- cGCuGCCGCgGGCCuGGGC-CCggCUGcGCg -3'
miRNA:   3'- cCG-CGGCG-CCGG-CCCGaGGagGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 87582 0.66 0.415327
Target:  5'- cGCGCCGCccaGGCCGGuGgUCUuggugCC-GGCg -3'
miRNA:   3'- cCGCGGCG---CCGGCC-CgAGGa----GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 81610 0.66 0.415327
Target:  5'- cGGCGcCCGCGG-CGGGUUCagcaccgCCgcgagcGGCc -3'
miRNA:   3'- -CCGC-GGCGCCgGCCCGAGga-----GGa-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 21414 0.66 0.423543
Target:  5'- cGCGCCGCgccGGCCGGuGCaguUCUUCCg--- -3'
miRNA:   3'- cCGCGGCG---CCGGCC-CG---AGGAGGaccg -5'
23709 3' -66.4 NC_005261.1 + 28215 0.66 0.423543
Target:  5'- cGCuGCCGCGGCCccaGCUaCCcCCcGGCg -3'
miRNA:   3'- cCG-CGGCGCCGGcc-CGA-GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 102387 0.66 0.439418
Target:  5'- aGCGCgGCGcgcagcuccucgcGCCaGcGCUCCUCCUGccGCu -3'
miRNA:   3'- cCGCGgCGC-------------CGGcC-CGAGGAGGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 4300 0.66 0.439418
Target:  5'- gGGCcCCGCGGCCGccgcguagcgcgcGGCcgCCUCgCggaucucggGGCa -3'
miRNA:   3'- -CCGcGGCGCCGGC-------------CCGa-GGAG-Ga--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 10702 0.66 0.439418
Target:  5'- aGGCGuUCGCGGgccgccuCCGGGCcccccucuUCCUCCgccGCc -3'
miRNA:   3'- -CCGC-GGCGCC-------GGCCCG--------AGGAGGac-CG- -5'
23709 3' -66.4 NC_005261.1 + 72625 0.66 0.437731
Target:  5'- gGGCGCagggGCGGCUuuauaguccccuggGGGCcgCCUCg-GGCc -3'
miRNA:   3'- -CCGCGg---CGCCGG--------------CCCGa-GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 80257 0.66 0.431856
Target:  5'- -cCGCCGCGcGCCaGGUacgUCUCCaGGCc -3'
miRNA:   3'- ccGCGGCGC-CGGcCCGa--GGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 28097 0.66 0.431856
Target:  5'- cGCGCCGCaGCaaagGGGUUagaggggggggCCUCgaGGCg -3'
miRNA:   3'- cCGCGGCGcCGg---CCCGA-----------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 5123 0.66 0.431856
Target:  5'- cGGCGCgGgCGGCCcgccGGcGCUCgCgcgCCUcGGCc -3'
miRNA:   3'- -CCGCGgC-GCCGG----CC-CGAG-Ga--GGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 56287 0.66 0.431856
Target:  5'- uGGCGCCGCuguucGCCGccacGGCcucccgCCUgcuacugacgagCCUGGCg -3'
miRNA:   3'- -CCGCGGCGc----CGGC----CCGa-----GGA------------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 4441 0.66 0.431856
Target:  5'- gGGCGUCaGCaG-CGGGC-CCUCCagcGGCg -3'
miRNA:   3'- -CCGCGG-CGcCgGCCCGaGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 125898 0.66 0.431856
Target:  5'- aGGCGCCugagccagauguGUGGCgGGGCUCg-CCacGCg -3'
miRNA:   3'- -CCGCGG------------CGCCGgCCCGAGgaGGacCG- -5'
23709 3' -66.4 NC_005261.1 + 96622 0.66 0.431856
Target:  5'- uGGCGCgcaGCcGCCGGGCgaUCUUCUcgcaGGCc -3'
miRNA:   3'- -CCGCGg--CGcCGGCCCG--AGGAGGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 61034 0.66 0.43102
Target:  5'- cGGCaCCGCGGCagcuggcuggugcUGGGCcuggagcacuUCUUCCUgccGGCg -3'
miRNA:   3'- -CCGcGGCGCCG-------------GCCCG----------AGGAGGA---CCG- -5'
23709 3' -66.4 NC_005261.1 + 97671 0.66 0.423543
Target:  5'- cGGCGuCCGCGGggcUUGGGCggggCUgCCggGGCg -3'
miRNA:   3'- -CCGC-GGCGCC---GGCCCGa---GGaGGa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.