miRNA display CGI


Results 1 - 20 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 5' -51.8 NC_005261.1 + 121389 0.66 0.987451
Target:  5'- cGCggCGGCGGcgccuGCCCGAgUGCGaCGGc -3'
miRNA:   3'- -CGuaGUCGCUuu---UGGGCUaGCGC-GUC- -5'
23709 5' -51.8 NC_005261.1 + 29474 0.66 0.987451
Target:  5'- aGCAguacgCGGCGcugguGGACCUGGUguaCGCGCGc -3'
miRNA:   3'- -CGUa----GUCGCu----UUUGGGCUA---GCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 87484 0.66 0.987451
Target:  5'- aGguUCGGCGcggccGugCUGG-CGCGCAGg -3'
miRNA:   3'- -CguAGUCGCuu---UugGGCUaGCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 50201 0.66 0.987451
Target:  5'- uGCAgCAGCGcgucGACCCGGUgcaaGCGCc- -3'
miRNA:   3'- -CGUaGUCGCuu--UUGGGCUAg---CGCGuc -5'
23709 5' -51.8 NC_005261.1 + 80077 0.66 0.987451
Target:  5'- gGCGUgGGgGAcgcGGACCgGcgCGCGCGc -3'
miRNA:   3'- -CGUAgUCgCU---UUUGGgCuaGCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 53687 0.66 0.987451
Target:  5'- ---aCAGCGAGAAaaagccCCCGGgcgcCGCGCGc -3'
miRNA:   3'- cguaGUCGCUUUU------GGGCUa---GCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 83373 0.66 0.987451
Target:  5'- aCGUCGGCGA--GCgCGGcgaGCGCGGc -3'
miRNA:   3'- cGUAGUCGCUuuUGgGCUag-CGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 76557 0.66 0.987292
Target:  5'- gGCAUgGGCGAcgagggcGAGCUCGuccucaCGCGCGa -3'
miRNA:   3'- -CGUAgUCGCU-------UUUGGGCua----GCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 87426 0.66 0.985794
Target:  5'- cGCGcCGGCGAAGGCgCCGAagccgaaGCGCc- -3'
miRNA:   3'- -CGUaGUCGCUUUUG-GGCUag-----CGCGuc -5'
23709 5' -51.8 NC_005261.1 + 15025 0.66 0.985794
Target:  5'- -uGUCGGCG-GGugCCGGggGCGUAGc -3'
miRNA:   3'- cgUAGUCGCuUUugGGCUagCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 13117 0.66 0.985794
Target:  5'- gGCGUCGGCG---GCCgCGGggCGCGUg- -3'
miRNA:   3'- -CGUAGUCGCuuuUGG-GCUa-GCGCGuc -5'
23709 5' -51.8 NC_005261.1 + 59146 0.66 0.985794
Target:  5'- ---cCGGCGcgc-CCCGggCGCGCGGc -3'
miRNA:   3'- cguaGUCGCuuuuGGGCuaGCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 102584 0.66 0.985794
Target:  5'- cGCGUCGGCGGccucGCCCGcgccuucCGCGUc- -3'
miRNA:   3'- -CGUAGUCGCUuu--UGGGCua-----GCGCGuc -5'
23709 5' -51.8 NC_005261.1 + 11828 0.66 0.985794
Target:  5'- aGUGggGGCGggGGCCCcgcGggCGCGCGu -3'
miRNA:   3'- -CGUagUCGCuuUUGGG---CuaGCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 93319 0.66 0.985794
Target:  5'- -uGUUAGCGGAGugugccACCaCGuccgCGCGCAGc -3'
miRNA:   3'- cgUAGUCGCUUU------UGG-GCua--GCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 136447 0.66 0.985794
Target:  5'- gGCGUCGcaggggcacGCGgcAGCCCcaGAcucgCGCGCGGg -3'
miRNA:   3'- -CGUAGU---------CGCuuUUGGG--CUa---GCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 5453 0.66 0.98562
Target:  5'- gGCAaCAGCGccccCCCGAgcagcccccgcuaUCGCGCGc -3'
miRNA:   3'- -CGUaGUCGCuuuuGGGCU-------------AGCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 86906 0.66 0.984723
Target:  5'- cGCG-CGGCGcgGACCCGcGUccaccgccgccgccgCGCGCGGc -3'
miRNA:   3'- -CGUaGUCGCuuUUGGGC-UA---------------GCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 131668 0.66 0.983975
Target:  5'- cCGUCuGCGAGGgugcgaccGCCCug-CGCGCGGc -3'
miRNA:   3'- cGUAGuCGCUUU--------UGGGcuaGCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 118090 0.66 0.983975
Target:  5'- uCGUCuGCuGGcgGCCCGc-CGCGCAGa -3'
miRNA:   3'- cGUAGuCG-CUuuUGGGCuaGCGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.