miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 5' -51.8 NC_005261.1 + 91530 0.66 0.977454
Target:  5'- aCAUgGcCGAGGACCCGGgcuacgCGCGCGc -3'
miRNA:   3'- cGUAgUcGCUUUUGGGCUa-----GCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 31862 0.66 0.981984
Target:  5'- cGCGUCuuCGG--GCCCGGcgccuUCGCGCGc -3'
miRNA:   3'- -CGUAGucGCUuuUGGGCU-----AGCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 81817 0.66 0.981984
Target:  5'- cGCggCGGUGAcgcCCCGcgcCGCGCGGa -3'
miRNA:   3'- -CGuaGUCGCUuuuGGGCua-GCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 67062 0.66 0.981984
Target:  5'- gGCGggcgCGcGCGggGGCUCGcUCGgGCGGu -3'
miRNA:   3'- -CGUa---GU-CGCuuUUGGGCuAGCgCGUC- -5'
23709 5' -51.8 NC_005261.1 + 75399 0.66 0.979814
Target:  5'- cCAUCGaCGAGggcgcGGCCCGGcgCGUGCAGu -3'
miRNA:   3'- cGUAGUcGCUU-----UUGGGCUa-GCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 95530 0.66 0.979586
Target:  5'- -uGUCGGUGAGcugcuucgugcgcAugCCGcgCGUGCAGc -3'
miRNA:   3'- cgUAGUCGCUU-------------UugGGCuaGCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 13810 0.66 0.981984
Target:  5'- aGCGUCGGcCGGcucGACCCGca-GCGuCAGg -3'
miRNA:   3'- -CGUAGUC-GCUu--UUGGGCuagCGC-GUC- -5'
23709 5' -51.8 NC_005261.1 + 39438 0.66 0.977454
Target:  5'- cGCGUCcGCaGGGcCCCGAgccucCGCGCGGc -3'
miRNA:   3'- -CGUAGuCGcUUUuGGGCUa----GCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 133886 0.66 0.977454
Target:  5'- -gGUCuGCGcAAGCCCGcggCGCGCu- -3'
miRNA:   3'- cgUAGuCGCuUUUGGGCua-GCGCGuc -5'
23709 5' -51.8 NC_005261.1 + 40860 0.66 0.977941
Target:  5'- cGCGUCcGCGAAGGCCgccccgaacaggguuCGAcagacgucaaagCGCGCAGc -3'
miRNA:   3'- -CGUAGuCGCUUUUGG---------------GCUa-----------GCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 14848 0.66 0.977454
Target:  5'- gGCAgcaGGCGGcgGCgC-AUCGCGCAGu -3'
miRNA:   3'- -CGUag-UCGCUuuUGgGcUAGCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 48908 0.66 0.977454
Target:  5'- gGCcUCuAGCGcGAGCCCGggCGC-CAGc -3'
miRNA:   3'- -CGuAG-UCGCuUUUGGGCuaGCGcGUC- -5'
23709 5' -51.8 NC_005261.1 + 50550 0.66 0.981984
Target:  5'- cCAUCGGCGcgcGGACCaCGGUCaCGCGc -3'
miRNA:   3'- cGUAGUCGCu--UUUGG-GCUAGcGCGUc -5'
23709 5' -51.8 NC_005261.1 + 83373 0.66 0.987451
Target:  5'- aCGUCGGCGA--GCgCGGcgaGCGCGGc -3'
miRNA:   3'- cGUAGUCGCUuuUGgGCUag-CGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 93462 0.66 0.981984
Target:  5'- gGCccCAGCGcgGugCCGGggCGCGCGu -3'
miRNA:   3'- -CGuaGUCGCuuUugGGCUa-GCGCGUc -5'
23709 5' -51.8 NC_005261.1 + 23475 0.66 0.977454
Target:  5'- cGCggCGGCGAGugcgcgGGCCCGccUGgGCAGg -3'
miRNA:   3'- -CGuaGUCGCUU------UUGGGCuaGCgCGUC- -5'
23709 5' -51.8 NC_005261.1 + 20424 0.66 0.979814
Target:  5'- gGCA-CGGCGccuuCCCGGgggggaGCGCAGa -3'
miRNA:   3'- -CGUaGUCGCuuuuGGGCUag----CGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 121009 0.66 0.981984
Target:  5'- uCGUCGuCgGAGGACCCGcUgGCGCGGg -3'
miRNA:   3'- cGUAGUcG-CUUUUGGGCuAgCGCGUC- -5'
23709 5' -51.8 NC_005261.1 + 109272 0.66 0.977454
Target:  5'- ---cCAGCGAgcuGAGCCCGGaCGCGaGGa -3'
miRNA:   3'- cguaGUCGCU---UUUGGGCUaGCGCgUC- -5'
23709 5' -51.8 NC_005261.1 + 49262 0.66 0.981984
Target:  5'- gGCGUCGGCGcgcacguCCgCGAggaagGCGCAGa -3'
miRNA:   3'- -CGUAGUCGCuuuu---GG-GCUag---CGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.