miRNA display CGI


Results 21 - 40 of 281 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23710 3' -60.7 NC_005261.1 + 77370 0.66 0.672373
Target:  5'- cGCCGucgugGGGCggcaccgcgGCAGcUgGCUGGUGCuGGGCc -3'
miRNA:   3'- -CGGU-----UCCG---------CGUC-AgCGACCGCG-CCUG- -5'
23710 3' -60.7 NC_005261.1 + 29277 0.66 0.672373
Target:  5'- gGCCAugagggcGGCGguGUCGU--GCGCGGcCc -3'
miRNA:   3'- -CGGUu------CCGCguCAGCGacCGCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 133276 0.66 0.672373
Target:  5'- cGCCAGcucGGCGCGGgcggccCGCcGGCGCucGCg -3'
miRNA:   3'- -CGGUU---CCGCGUCa-----GCGaCCGCGccUG- -5'
23710 3' -60.7 NC_005261.1 + 57538 0.66 0.672373
Target:  5'- uGCCAgccgcgcaccccAGGCGCGcUCaGCc-GCGCGGGCu -3'
miRNA:   3'- -CGGU------------UCCGCGUcAG-CGacCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 31435 0.66 0.672373
Target:  5'- gGCCcGGGCGCGcucCGCcucGGCGCGcGCg -3'
miRNA:   3'- -CGGuUCCGCGUca-GCGa--CCGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 55530 0.66 0.671375
Target:  5'- uGCCAGcgaaggcGGCGaCGG-CGCUGGCgGUGGcCu -3'
miRNA:   3'- -CGGUU-------CCGC-GUCaGCGACCG-CGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 66799 0.66 0.671375
Target:  5'- aGCCGaucacguAGGCccGCcGcCGCggcccgGGCGCGGGCc -3'
miRNA:   3'- -CGGU-------UCCG--CGuCaGCGa-----CCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 96001 0.66 0.662383
Target:  5'- gGCCcAGcuGCGCcugcacGUgGUUGGCGCGGAa -3'
miRNA:   3'- -CGGuUC--CGCGu-----CAgCGACCGCGCCUg -5'
23710 3' -60.7 NC_005261.1 + 48200 0.66 0.662383
Target:  5'- --gGAGGaCGCAGggagCGCgggGGCgGCGGAg -3'
miRNA:   3'- cggUUCC-GCGUCa---GCGa--CCG-CGCCUg -5'
23710 3' -60.7 NC_005261.1 + 121229 0.66 0.662383
Target:  5'- cGUCAcc-CGCGG-CGCgGGCGUGGGCa -3'
miRNA:   3'- -CGGUuccGCGUCaGCGaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 107462 0.66 0.662383
Target:  5'- gGCCGccGGCGCAGcCcCUcgGGgGCGGGCc -3'
miRNA:   3'- -CGGUu-CCGCGUCaGcGA--CCgCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 64797 0.66 0.662383
Target:  5'- gGCgGAGGCgGCGGcCGCgagcGCGCGGcCc -3'
miRNA:   3'- -CGgUUCCG-CGUCaGCGac--CGCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 63448 0.66 0.662383
Target:  5'- aCUgcGGCGCGGgcgCGCUcGGCGCGcucgaGGCc -3'
miRNA:   3'- cGGuuCCGCGUCa--GCGA-CCGCGC-----CUG- -5'
23710 3' -60.7 NC_005261.1 + 54080 0.66 0.662383
Target:  5'- cGCCgAAGGCGUAgGUCGCguccggGGcCGCGcucGCg -3'
miRNA:   3'- -CGG-UUCCGCGU-CAGCGa-----CC-GCGCc--UG- -5'
23710 3' -60.7 NC_005261.1 + 107087 0.66 0.662383
Target:  5'- cGCCGccGCGCGGggccCGCgGGCGCGc-- -3'
miRNA:   3'- -CGGUucCGCGUCa---GCGaCCGCGCcug -5'
23710 3' -60.7 NC_005261.1 + 87401 0.66 0.662383
Target:  5'- gGCCGAcGGCGg---CGCgugGGCGCGG-Cg -3'
miRNA:   3'- -CGGUU-CCGCgucaGCGa--CCGCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 47256 0.66 0.661383
Target:  5'- gGCCGAGGCcuCAGcCGUgccgcccggcgagUGGCcCGGGCg -3'
miRNA:   3'- -CGGUUCCGc-GUCaGCG-------------ACCGcGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 30629 0.66 0.65237
Target:  5'- cGCCccaGCGC--UCGCUGGCGCGcGGu -3'
miRNA:   3'- -CGGuucCGCGucAGCGACCGCGC-CUg -5'
23710 3' -60.7 NC_005261.1 + 65175 0.66 0.65237
Target:  5'- cGCCucgaGGGGCGCGGUgGCcgcGaGCGCGaGCa -3'
miRNA:   3'- -CGG----UUCCGCGUCAgCGa--C-CGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 65235 0.66 0.65237
Target:  5'- cGCCAGgcGGCGUuGUUGCUcGGC-CGGGg -3'
miRNA:   3'- -CGGUU--CCGCGuCAGCGA-CCGcGCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.