miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23710 5' -54.1 NC_005261.1 + 97897 0.66 0.921768
Target:  5'- -gGCCGGCGGAcCGUcUGGGcGCCg-- -3'
miRNA:   3'- gaCGGUCGCCUuGUA-ACUCaCGGaga -5'
23710 5' -54.1 NC_005261.1 + 78160 0.66 0.921768
Target:  5'- gCUGCCGGCGGGcCAccUGAGgaGCC-Cg -3'
miRNA:   3'- -GACGGUCGCCUuGUa-ACUCa-CGGaGa -5'
23710 5' -54.1 NC_005261.1 + 110434 0.67 0.88291
Target:  5'- gCUGCCAcGCGuucccgcaccGGGCGuUUGGGUGCCUg- -3'
miRNA:   3'- -GACGGU-CGC----------CUUGU-AACUCACGGAga -5'
23710 5' -54.1 NC_005261.1 + 92930 0.68 0.875582
Target:  5'- gUGCCGGCGGAGCAgc---UGCC-Cg -3'
miRNA:   3'- gACGGUCGCCUUGUaacucACGGaGa -5'
23710 5' -54.1 NC_005261.1 + 97633 0.7 0.751976
Target:  5'- -aGCgGGCGGAGCGggcgcGGGUGCCg-- -3'
miRNA:   3'- gaCGgUCGCCUUGUaa---CUCACGGaga -5'
23710 5' -54.1 NC_005261.1 + 85828 0.71 0.690742
Target:  5'- -gGCCAGCGaGAGCGUguGGUugGCCUCg -3'
miRNA:   3'- gaCGGUCGC-CUUGUAacUCA--CGGAGa -5'
23710 5' -54.1 NC_005261.1 + 57684 0.72 0.648743
Target:  5'- -aGCCGGCGGGGCAcaGGGccagcaggGCCUCg -3'
miRNA:   3'- gaCGGUCGCCUUGUaaCUCa-------CGGAGa -5'
23710 5' -54.1 NC_005261.1 + 93686 0.82 0.193987
Target:  5'- -cGCCGGCGGGGCGccggcGGGUGCCUCUu -3'
miRNA:   3'- gaCGGUCGCCUUGUaa---CUCACGGAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.