Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23710 | 5' | -54.1 | NC_005261.1 | + | 97897 | 0.66 | 0.921768 |
Target: 5'- -gGCCGGCGGAcCGUcUGGGcGCCg-- -3' miRNA: 3'- gaCGGUCGCCUuGUA-ACUCaCGGaga -5' |
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23710 | 5' | -54.1 | NC_005261.1 | + | 78160 | 0.66 | 0.921768 |
Target: 5'- gCUGCCGGCGGGcCAccUGAGgaGCC-Cg -3' miRNA: 3'- -GACGGUCGCCUuGUa-ACUCa-CGGaGa -5' |
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23710 | 5' | -54.1 | NC_005261.1 | + | 110434 | 0.67 | 0.88291 |
Target: 5'- gCUGCCAcGCGuucccgcaccGGGCGuUUGGGUGCCUg- -3' miRNA: 3'- -GACGGU-CGC----------CUUGU-AACUCACGGAga -5' |
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23710 | 5' | -54.1 | NC_005261.1 | + | 92930 | 0.68 | 0.875582 |
Target: 5'- gUGCCGGCGGAGCAgc---UGCC-Cg -3' miRNA: 3'- gACGGUCGCCUUGUaacucACGGaGa -5' |
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23710 | 5' | -54.1 | NC_005261.1 | + | 97633 | 0.7 | 0.751976 |
Target: 5'- -aGCgGGCGGAGCGggcgcGGGUGCCg-- -3' miRNA: 3'- gaCGgUCGCCUUGUaa---CUCACGGaga -5' |
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23710 | 5' | -54.1 | NC_005261.1 | + | 85828 | 0.71 | 0.690742 |
Target: 5'- -gGCCAGCGaGAGCGUguGGUugGCCUCg -3' miRNA: 3'- gaCGGUCGC-CUUGUAacUCA--CGGAGa -5' |
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23710 | 5' | -54.1 | NC_005261.1 | + | 57684 | 0.72 | 0.648743 |
Target: 5'- -aGCCGGCGGGGCAcaGGGccagcaggGCCUCg -3' miRNA: 3'- gaCGGUCGCCUUGUaaCUCa-------CGGAGa -5' |
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23710 | 5' | -54.1 | NC_005261.1 | + | 93686 | 0.82 | 0.193987 |
Target: 5'- -cGCCGGCGGGGCGccggcGGGUGCCUCUu -3' miRNA: 3'- gaCGGUCGCCUUGUaa---CUCACGGAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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