miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 36780 0.66 0.841332
Target:  5'- -gGCCC-GUGCGuUGCGCcGAgACUuUGCg -3'
miRNA:   3'- ugCGGGuCGCGU-ACGCG-CUgUGA-ACG- -5'
23711 3' -57.4 NC_005261.1 + 74257 0.66 0.841332
Target:  5'- uACGuCCCAuucGCGCGcGCGCGucCGCggcggGCg -3'
miRNA:   3'- -UGC-GGGU---CGCGUaCGCGCu-GUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 107760 0.66 0.841332
Target:  5'- cACGcCCCAGCGCu--CGCuGGCGCgcgGUc -3'
miRNA:   3'- -UGC-GGGUCGCGuacGCG-CUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 13327 0.66 0.841332
Target:  5'- aGCGCCCu-CGCAcucGCGCGGCcaGCggucgGCg -3'
miRNA:   3'- -UGCGGGucGCGUa--CGCGCUG--UGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 119 0.66 0.841332
Target:  5'- cCGCgCCGGCGCcgccccugGUGCucGCGGgGCUgGCa -3'
miRNA:   3'- uGCG-GGUCGCG--------UACG--CGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 110332 0.66 0.841332
Target:  5'- cCGCCgCGGaCGCGcUGCGCGcGCACcUGa -3'
miRNA:   3'- uGCGG-GUC-GCGU-ACGCGC-UGUGaACg -5'
23711 3' -57.4 NC_005261.1 + 47141 0.66 0.841332
Target:  5'- cGCGCaCAGCGCcgGCGuCGGCg---GCc -3'
miRNA:   3'- -UGCGgGUCGCGuaCGC-GCUGugaaCG- -5'
23711 3' -57.4 NC_005261.1 + 137802 0.66 0.841332
Target:  5'- cCGCgCCGGCGCcgccccugGUGCucGCGGgGCUgGCa -3'
miRNA:   3'- uGCG-GGUCGCG--------UACG--CGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 64768 0.66 0.841332
Target:  5'- uCGgCCAGCucGCG-GCGCGcCACgacgUGCg -3'
miRNA:   3'- uGCgGGUCG--CGUaCGCGCuGUGa---ACG- -5'
23711 3' -57.4 NC_005261.1 + 115304 0.66 0.838877
Target:  5'- aACGCgUCGGCGCAcgucUGCGCGAUcgggggguaccgggACgUGUa -3'
miRNA:   3'- -UGCG-GGUCGCGU----ACGCGCUG--------------UGaACG- -5'
23711 3' -57.4 NC_005261.1 + 84672 0.66 0.833082
Target:  5'- cGCGCCCGcggccGCGCAcacgaagccgGCGCGcgggcACGCgaGCa -3'
miRNA:   3'- -UGCGGGU-----CGCGUa---------CGCGC-----UGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 118049 0.66 0.833082
Target:  5'- gACGCCC-GCGCuggcgGcCGCGGCAgcgGCc -3'
miRNA:   3'- -UGCGGGuCGCGua---C-GCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 118664 0.66 0.833082
Target:  5'- cGCGCUCGGgGCugagggcgGCG-GGCGCUgGCg -3'
miRNA:   3'- -UGCGGGUCgCGua------CGCgCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 69467 0.66 0.833082
Target:  5'- cGCGUCgAGgGCcacauccGCGCGAUGCUggUGCa -3'
miRNA:   3'- -UGCGGgUCgCGua-----CGCGCUGUGA--ACG- -5'
23711 3' -57.4 NC_005261.1 + 62200 0.66 0.833082
Target:  5'- cAUGUgCAGCGCgaggGUGCGCGcggcCGCgucUGCg -3'
miRNA:   3'- -UGCGgGUCGCG----UACGCGCu---GUGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 37001 0.66 0.833082
Target:  5'- -aGCCCGcGgGC-UGCGCGGgGCcaguUUGCg -3'
miRNA:   3'- ugCGGGU-CgCGuACGCGCUgUG----AACG- -5'
23711 3' -57.4 NC_005261.1 + 65651 0.66 0.833082
Target:  5'- uCGCCUcuGGCGCGcGC-CGGCGCgcaGCg -3'
miRNA:   3'- uGCGGG--UCGCGUaCGcGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 62251 0.66 0.833082
Target:  5'- cACGUCCGGCGuCAccUGguaGCGGCGCccgUUGUg -3'
miRNA:   3'- -UGCGGGUCGC-GU--ACg--CGCUGUG---AACG- -5'
23711 3' -57.4 NC_005261.1 + 72851 0.66 0.833082
Target:  5'- gGCG-CCAGCGCccagGCGUGGacCGCggGCa -3'
miRNA:   3'- -UGCgGGUCGCGua--CGCGCU--GUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 50861 0.66 0.833082
Target:  5'- uCGCCCAG-GUcgGCGCcuucgccgcgcuGGCGCUgcuaUGCu -3'
miRNA:   3'- uGCGGGUCgCGuaCGCG------------CUGUGA----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.