miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 101888 0.66 0.798318
Target:  5'- gGCGCCCAGcCGCGcGCGCuccuccucgaaaGcCGCgUGCc -3'
miRNA:   3'- -UGCGGGUC-GCGUaCGCG------------CuGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 30315 0.66 0.807257
Target:  5'- -aGCCCgccggcggaAGUGCcgGCGCGGCug--GCg -3'
miRNA:   3'- ugCGGG---------UCGCGuaCGCGCUGugaaCG- -5'
23711 3' -57.4 NC_005261.1 + 112465 0.66 0.798318
Target:  5'- -gGCCguGCuaaaCAUGCGCGGCA--UGCu -3'
miRNA:   3'- ugCGGguCGc---GUACGCGCUGUgaACG- -5'
23711 3' -57.4 NC_005261.1 + 131597 0.66 0.798318
Target:  5'- -gGCCUAcGCGCGcGCGCG-CACguacGCg -3'
miRNA:   3'- ugCGGGU-CGCGUaCGCGCuGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 45656 0.66 0.807257
Target:  5'- gUGCCCAGCGg--GCGUGAUcaACgcGCg -3'
miRNA:   3'- uGCGGGUCGCguaCGCGCUG--UGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 96549 0.66 0.807257
Target:  5'- uAC-CCCAGCaGCAUGCGUaGCGCgaauaUGUc -3'
miRNA:   3'- -UGcGGGUCG-CGUACGCGcUGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 131190 0.66 0.807257
Target:  5'- uACGCCCgcGGCGCGgucGCcGCcGGCGCgcccGCg -3'
miRNA:   3'- -UGCGGG--UCGCGUa--CG-CG-CUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 134149 0.66 0.797415
Target:  5'- uGCGCCUGGCGCcaccCGgGGCugcugcucccgcuGCUUGCg -3'
miRNA:   3'- -UGCGGGUCGCGuac-GCgCUG-------------UGAACG- -5'
23711 3' -57.4 NC_005261.1 + 102968 0.66 0.797415
Target:  5'- gGCGCCgCGGgcuccgcCGCcgcGCGCGACACggcgGCc -3'
miRNA:   3'- -UGCGG-GUC-------GCGua-CGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 15380 0.66 0.798318
Target:  5'- gGCGCCCucGGCGCcgccgucgAUGC-CGACGC--GCa -3'
miRNA:   3'- -UGCGGG--UCGCG--------UACGcGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 28582 0.66 0.807257
Target:  5'- gGCGCgCgAGCGCcgGCGgGcCGCccGCg -3'
miRNA:   3'- -UGCG-GgUCGCGuaCGCgCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 137802 0.66 0.841332
Target:  5'- cCGCgCCGGCGCcgccccugGUGCucGCGGgGCUgGCa -3'
miRNA:   3'- uGCG-GGUCGCG--------UACG--CGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 29523 0.66 0.807257
Target:  5'- -gGCCUGGCuGCAgaGCGCGAaGCUcGCg -3'
miRNA:   3'- ugCGGGUCG-CGUa-CGCGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 72277 0.66 0.807257
Target:  5'- uCGCCCAGCaGCcgGCugagguucGCGACGUggGCc -3'
miRNA:   3'- uGCGGGUCG-CGuaCG--------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 75472 0.66 0.798318
Target:  5'- gGCGCCgGGCgGCG-GCGCGggccgcuacgaGCGCgggGCg -3'
miRNA:   3'- -UGCGGgUCG-CGUaCGCGC-----------UGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 92808 0.66 0.798318
Target:  5'- uCGCCgGGCGCGcggGCGUGGgACcgcGCg -3'
miRNA:   3'- uGCGGgUCGCGUa--CGCGCUgUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 79836 0.66 0.798318
Target:  5'- gGCGgCCAGCGCA-GCGCuagccgccGCGCUgggGUu -3'
miRNA:   3'- -UGCgGGUCGCGUaCGCGc-------UGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 32331 0.66 0.807257
Target:  5'- gGCGCCCGGCGUGgccUGgGACGCg--- -3'
miRNA:   3'- -UGCGGGUCGCGUac-GCgCUGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 3003 0.66 0.807257
Target:  5'- -gGCCCGGCGCcgGgGCuccCGCggGCc -3'
miRNA:   3'- ugCGGGUCGCGuaCgCGcu-GUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 56499 0.66 0.798318
Target:  5'- cGCGCCUcaGGCGCGuuUGCGCaaGugGCc-GCg -3'
miRNA:   3'- -UGCGGG--UCGCGU--ACGCG--CugUGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.