miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 29523 0.66 0.807257
Target:  5'- -gGCCUGGCuGCAgaGCGCGAaGCUcGCg -3'
miRNA:   3'- ugCGGGUCG-CGUa-CGCGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 137802 0.66 0.841332
Target:  5'- cCGCgCCGGCGCcgccccugGUGCucGCGGgGCUgGCa -3'
miRNA:   3'- uGCG-GGUCGCG--------UACG--CGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 83704 0.66 0.824647
Target:  5'- gGCGCCgcagcCAGCGCAccaugaGCGCGuuuaGCUUGa -3'
miRNA:   3'- -UGCGG-----GUCGCGUa-----CGCGCug--UGAACg -5'
23711 3' -57.4 NC_005261.1 + 132539 0.66 0.798318
Target:  5'- cGCGCCCucgcGCGCGaGgGCGAgGCgcaguacgGCu -3'
miRNA:   3'- -UGCGGGu---CGCGUaCgCGCUgUGaa------CG- -5'
23711 3' -57.4 NC_005261.1 + 96549 0.66 0.807257
Target:  5'- uAC-CCCAGCaGCAUGCGUaGCGCgaauaUGUc -3'
miRNA:   3'- -UGcGGGUCG-CGUACGCGcUGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 75472 0.66 0.798318
Target:  5'- gGCGCCgGGCgGCG-GCGCGggccgcuacgaGCGCgggGCg -3'
miRNA:   3'- -UGCGGgUCG-CGUaCGCGC-----------UGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 108157 0.66 0.807257
Target:  5'- cCGCCugCAGCGCGUccgccagggcGCGCGGC-CgcgGCu -3'
miRNA:   3'- uGCGG--GUCGCGUA----------CGCGCUGuGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 93550 0.66 0.824647
Target:  5'- cCGCCCAGUagcggucgacgGCGgugcgGCGgGACGCgaucGCg -3'
miRNA:   3'- uGCGGGUCG-----------CGUa----CGCgCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 113043 0.66 0.816036
Target:  5'- cGCGCgCGGCGUG-GCGCGccacCGCUcGCu -3'
miRNA:   3'- -UGCGgGUCGCGUaCGCGCu---GUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 112465 0.66 0.798318
Target:  5'- -gGCCguGCuaaaCAUGCGCGGCA--UGCu -3'
miRNA:   3'- ugCGGguCGc---GUACGCGCUGUgaACG- -5'
23711 3' -57.4 NC_005261.1 + 79836 0.66 0.798318
Target:  5'- gGCGgCCAGCGCA-GCGCuagccgccGCGCUgggGUu -3'
miRNA:   3'- -UGCgGGUCGCGUaCGCGc-------UGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 10889 0.66 0.816036
Target:  5'- -aGCCCGGCGCcaacgGCGgCGGCGgcaGCg -3'
miRNA:   3'- ugCGGGUCGCGua---CGC-GCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 57505 0.66 0.828042
Target:  5'- cACGuCCCGGCGgcgggccuucuuccaCAggcacgGCGCGGCGCacggGCa -3'
miRNA:   3'- -UGC-GGGUCGC---------------GUa-----CGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 102968 0.66 0.797415
Target:  5'- gGCGCCgCGGgcuccgcCGCcgcGCGCGACACggcgGCc -3'
miRNA:   3'- -UGCGG-GUC-------GCGua-CGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 43129 0.66 0.807257
Target:  5'- cGCGCCUAcacaCGCGcGCGCGGC-CU-GCg -3'
miRNA:   3'- -UGCGGGUc---GCGUaCGCGCUGuGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 65153 0.66 0.815166
Target:  5'- cCGCgCCAGCGCGcagaaggUGCGCu-CGCU-GCc -3'
miRNA:   3'- uGCG-GGUCGCGU-------ACGCGcuGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 74155 0.66 0.815166
Target:  5'- --uCCCAGCgggGCAUGCGCGugcucaaggugacGCGCcUGCc -3'
miRNA:   3'- ugcGGGUCG---CGUACGCGC-------------UGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 127778 0.66 0.807257
Target:  5'- gACGCCCGGCuGCucgagcgGCGggcCGGCGCcgcgGCg -3'
miRNA:   3'- -UGCGGGUCG-CGua-----CGC---GCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 113540 0.66 0.807257
Target:  5'- -gGCUCGGgGcCGUGCGCG-CGCUggaccGCg -3'
miRNA:   3'- ugCGGGUCgC-GUACGCGCuGUGAa----CG- -5'
23711 3' -57.4 NC_005261.1 + 37001 0.66 0.833082
Target:  5'- -aGCCCGcGgGC-UGCGCGGgGCcaguUUGCg -3'
miRNA:   3'- ugCGGGU-CgCGuACGCGCUgUG----AACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.