miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 118664 0.66 0.833082
Target:  5'- cGCGCUCGGgGCugagggcgGCG-GGCGCUgGCg -3'
miRNA:   3'- -UGCGGGUCgCGua------CGCgCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 83366 0.66 0.816036
Target:  5'- gGCGUCCacgucggcgAGCGCGgcgaGCGCGGC-CUcgGCc -3'
miRNA:   3'- -UGCGGG---------UCGCGUa---CGCGCUGuGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 129193 0.66 0.824647
Target:  5'- -aGgCCAGCGCGUgGCGCaGCuGCUucUGCu -3'
miRNA:   3'- ugCgGGUCGCGUA-CGCGcUG-UGA--ACG- -5'
23711 3' -57.4 NC_005261.1 + 50861 0.66 0.833082
Target:  5'- uCGCCCAG-GUcgGCGCcuucgccgcgcuGGCGCUgcuaUGCu -3'
miRNA:   3'- uGCGGGUCgCGuaCGCG------------CUGUGA----ACG- -5'
23711 3' -57.4 NC_005261.1 + 32331 0.66 0.807257
Target:  5'- gGCGCCCGGCGUGgccUGgGACGCg--- -3'
miRNA:   3'- -UGCGGGUCGCGUac-GCgCUGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 45998 0.66 0.824647
Target:  5'- gGCGCCa--UGUGUGCGCGGCAg--GCg -3'
miRNA:   3'- -UGCGGgucGCGUACGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 65153 0.66 0.815166
Target:  5'- cCGCgCCAGCGCGcagaaggUGCGCu-CGCU-GCc -3'
miRNA:   3'- uGCG-GGUCGCGU-------ACGCGcuGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 15380 0.66 0.798318
Target:  5'- gGCGCCCucGGCGCcgccgucgAUGC-CGACGC--GCa -3'
miRNA:   3'- -UGCGGG--UCGCG--------UACGcGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 79836 0.66 0.798318
Target:  5'- gGCGgCCAGCGCA-GCGCuagccgccGCGCUgggGUu -3'
miRNA:   3'- -UGCgGGUCGCGUaCGCGc-------UGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 118049 0.66 0.833082
Target:  5'- gACGCCC-GCGCuggcgGcCGCGGCAgcgGCc -3'
miRNA:   3'- -UGCGGGuCGCGua---C-GCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 72277 0.66 0.807257
Target:  5'- uCGCCCAGCaGCcgGCugagguucGCGACGUggGCc -3'
miRNA:   3'- uGCGGGUCG-CGuaCG--------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 131190 0.66 0.807257
Target:  5'- uACGCCCgcGGCGCGgucGCcGCcGGCGCgcccGCg -3'
miRNA:   3'- -UGCGGG--UCGCGUa--CG-CG-CUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 42241 0.66 0.829729
Target:  5'- cGCGCgCAGCGCcucgaacugcccGCGCGAgGCggccGCg -3'
miRNA:   3'- -UGCGgGUCGCGua----------CGCGCUgUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 110332 0.66 0.841332
Target:  5'- cCGCCgCGGaCGCGcUGCGCGcGCACcUGa -3'
miRNA:   3'- uGCGG-GUC-GCGU-ACGCGC-UGUGaACg -5'
23711 3' -57.4 NC_005261.1 + 13327 0.66 0.841332
Target:  5'- aGCGCCCu-CGCAcucGCGCGGCcaGCggucgGCg -3'
miRNA:   3'- -UGCGGGucGCGUa--CGCGCUG--UGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 69467 0.66 0.833082
Target:  5'- cGCGUCgAGgGCcacauccGCGCGAUGCUggUGCa -3'
miRNA:   3'- -UGCGGgUCgCGua-----CGCGCUGUGA--ACG- -5'
23711 3' -57.4 NC_005261.1 + 87042 0.66 0.824647
Target:  5'- cGCGUCCAG-GC-UGCGC-ACACgcaGCg -3'
miRNA:   3'- -UGCGGGUCgCGuACGCGcUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 54904 0.66 0.807257
Target:  5'- gUGCCgCAGCGCGcGUaGCGAgCACUcGCc -3'
miRNA:   3'- uGCGG-GUCGCGUaCG-CGCU-GUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 112465 0.66 0.798318
Target:  5'- -gGCCguGCuaaaCAUGCGCGGCA--UGCu -3'
miRNA:   3'- ugCGGguCGc---GUACGCGCUGUgaACG- -5'
23711 3' -57.4 NC_005261.1 + 59723 0.67 0.751531
Target:  5'- cCGCCgGGCgGCA-GCgGCGGCGCgcgGCc -3'
miRNA:   3'- uGCGGgUCG-CGUaCG-CGCUGUGaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.