miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 121125 0.67 0.751531
Target:  5'- gGCGCggaGGCGCggGCGCGAgCGCgaGUa -3'
miRNA:   3'- -UGCGgg-UCGCGuaCGCGCU-GUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 120647 0.67 0.751531
Target:  5'- gUGCCUgcGGCGCAagGCGCgGGCGCgccUGUg -3'
miRNA:   3'- uGCGGG--UCGCGUa-CGCG-CUGUGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 121382 0.67 0.751531
Target:  5'- gGCGCCC--CGCG-GCgGCGGCGCcUGCc -3'
miRNA:   3'- -UGCGGGucGCGUaCG-CGCUGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 110107 0.67 0.751531
Target:  5'- aGCGcCCCGGCGCGccCGUccuGACGCUgacGCa -3'
miRNA:   3'- -UGC-GGGUCGCGUacGCG---CUGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 77063 0.67 0.751531
Target:  5'- cGCGCCUggccGGUGCc-GCGCGAgGCgcugGCg -3'
miRNA:   3'- -UGCGGG----UCGCGuaCGCGCUgUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 37220 0.67 0.751531
Target:  5'- gGCuCCCGcGgGCuUGCGCGGCGCggcGCg -3'
miRNA:   3'- -UGcGGGU-CgCGuACGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 135095 0.67 0.761137
Target:  5'- -gGCCCGGCgGCGgaGCGCGAgGCggaccccGCg -3'
miRNA:   3'- ugCGGGUCG-CGUa-CGCGCUgUGaa-----CG- -5'
23711 3' -57.4 NC_005261.1 + 107872 0.67 0.761137
Target:  5'- cCGCCCGcGCGCucgcgccCGCGGCccGCUUGUc -3'
miRNA:   3'- uGCGGGU-CGCGuac----GCGCUG--UGAACG- -5'
23711 3' -57.4 NC_005261.1 + 86892 0.67 0.761137
Target:  5'- cGCGCCCuGGUcCGcGCGCGGCGCggacccGCg -3'
miRNA:   3'- -UGCGGG-UCGcGUaCGCGCUGUGaa----CG- -5'
23711 3' -57.4 NC_005261.1 + 76495 0.67 0.761137
Target:  5'- -aGCCCucGGCGCucGCGCG-CGCgaGCa -3'
miRNA:   3'- ugCGGG--UCGCGuaCGCGCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 37779 0.67 0.766846
Target:  5'- gGCGCCCcaacggacucccCGCGUGCGUGACGac-GCu -3'
miRNA:   3'- -UGCGGGuc----------GCGUACGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 132361 0.67 0.761137
Target:  5'- cCGCCgCGGCGCGcuCGCcGCGCUcGCg -3'
miRNA:   3'- uGCGG-GUCGCGUacGCGcUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 2406 0.67 0.770628
Target:  5'- cGCGCCCGcGgGCcccGCGCGGCGgCggGCc -3'
miRNA:   3'- -UGCGGGU-CgCGua-CGCGCUGU-GaaCG- -5'
23711 3' -57.4 NC_005261.1 + 70830 0.67 0.770628
Target:  5'- gGCGCgCCGGCGC--GCGCGuACGCc--- -3'
miRNA:   3'- -UGCG-GGUCGCGuaCGCGC-UGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 70470 0.67 0.770628
Target:  5'- -aGCCCGcgccGCGgGUGCGCG-CGCgugaGCa -3'
miRNA:   3'- ugCGGGU----CGCgUACGCGCuGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 111843 0.67 0.761137
Target:  5'- uCGCggAGCGCGUGCGCGcCAaccGCg -3'
miRNA:   3'- uGCGggUCGCGUACGCGCuGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 93462 0.67 0.761137
Target:  5'- gGC-CCCAGCGCGgugccgggGCGCGcguCGCccGCg -3'
miRNA:   3'- -UGcGGGUCGCGUa-------CGCGCu--GUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 96989 0.67 0.761137
Target:  5'- -gGCCuCGGCGCGgcuaaGCGCGcCAUUggGCg -3'
miRNA:   3'- ugCGG-GUCGCGUa----CGCGCuGUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 82956 0.67 0.761137
Target:  5'- gGCGCCgGGCGgAagacguggUGCGCGucgaGCACggagGCg -3'
miRNA:   3'- -UGCGGgUCGCgU--------ACGCGC----UGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 108566 0.67 0.761137
Target:  5'- cACGUCguGCGaCGUGCGCG-CGaagGCg -3'
miRNA:   3'- -UGCGGguCGC-GUACGCGCuGUgaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.