Results 101 - 120 of 401 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 82956 | 0.67 | 0.761137 |
Target: 5'- gGCGCCgGGCGgAagacguggUGCGCGucgaGCACggagGCg -3' miRNA: 3'- -UGCGGgUCGCgU--------ACGCGC----UGUGaa--CG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 96989 | 0.67 | 0.761137 |
Target: 5'- -gGCCuCGGCGCGgcuaaGCGCGcCAUUggGCg -3' miRNA: 3'- ugCGG-GUCGCGUa----CGCGCuGUGAa-CG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 133873 | 0.67 | 0.751531 |
Target: 5'- cGCGCCUAccuguggucuGCGCAaGCccGCGGCGCgcUGCu -3' miRNA: 3'- -UGCGGGU----------CGCGUaCG--CGCUGUGa-ACG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 86892 | 0.67 | 0.761137 |
Target: 5'- cGCGCCCuGGUcCGcGCGCGGCGCggacccGCg -3' miRNA: 3'- -UGCGGG-UCGcGUaCGCGCUGUGaa----CG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 108485 | 0.67 | 0.779995 |
Target: 5'- gGCGCgCAcGCGCGc-CGCGACGCUacccGCg -3' miRNA: 3'- -UGCGgGU-CGCGUacGCGCUGUGAa---CG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 121382 | 0.67 | 0.751531 |
Target: 5'- gGCGCCC--CGCG-GCgGCGGCGCcUGCc -3' miRNA: 3'- -UGCGGGucGCGUaCG-CGCUGUGaACG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 93462 | 0.67 | 0.761137 |
Target: 5'- gGC-CCCAGCGCGgugccgggGCGCGcguCGCccGCg -3' miRNA: 3'- -UGcGGGUCGCGUa-------CGCGCu--GUGaaCG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 132361 | 0.67 | 0.761137 |
Target: 5'- cCGCCgCGGCGCGcuCGCcGCGCUcGCg -3' miRNA: 3'- uGCGG-GUCGCGUacGCGcUGUGAaCG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 90883 | 0.67 | 0.779995 |
Target: 5'- cGCGCUgGGCGaCGgcaugGCGCGGCAgguCUcgGCg -3' miRNA: 3'- -UGCGGgUCGC-GUa----CGCGCUGU---GAa-CG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 57432 | 0.67 | 0.779995 |
Target: 5'- -aGCCCAggauGCGCAcccGCGCGACgGCguccGCg -3' miRNA: 3'- ugCGGGU----CGCGUa--CGCGCUG-UGaa--CG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 65816 | 0.67 | 0.779995 |
Target: 5'- gUGCCCGG-GCGgcgGCGCGAaGCU-GCc -3' miRNA: 3'- uGCGGGUCgCGUa--CGCGCUgUGAaCG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 121125 | 0.67 | 0.751531 |
Target: 5'- gGCGCggaGGCGCggGCGCGAgCGCgaGUa -3' miRNA: 3'- -UGCGgg-UCGCGuaCGCGCU-GUGaaCG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 70830 | 0.67 | 0.770628 |
Target: 5'- gGCGCgCCGGCGC--GCGCGuACGCc--- -3' miRNA: 3'- -UGCG-GGUCGCGuaCGCGC-UGUGaacg -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 2406 | 0.67 | 0.770628 |
Target: 5'- cGCGCCCGcGgGCcccGCGCGGCGgCggGCc -3' miRNA: 3'- -UGCGGGU-CgCGua-CGCGCUGU-GaaCG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 57268 | 0.67 | 0.761137 |
Target: 5'- cACGCUC--CGCAUcGCGCGGCAgcUGCu -3' miRNA: 3'- -UGCGGGucGCGUA-CGCGCUGUgaACG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 76495 | 0.67 | 0.761137 |
Target: 5'- -aGCCCucGGCGCucGCGCG-CGCgaGCa -3' miRNA: 3'- ugCGGG--UCGCGuaCGCGCuGUGaaCG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 62508 | 0.67 | 0.758267 |
Target: 5'- -gGCCCguguucugcaggaaGGCGCc-GCGCGGCAUggGCc -3' miRNA: 3'- ugCGGG--------------UCGCGuaCGCGCUGUGaaCG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 107872 | 0.67 | 0.761137 |
Target: 5'- cCGCCCGcGCGCucgcgccCGCGGCccGCUUGUc -3' miRNA: 3'- uGCGGGU-CGCGuac----GCGCUG--UGAACG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 47066 | 0.67 | 0.789227 |
Target: 5'- -gGCCgAGCGCGUGguaCGCGuGCACgccgaagGCg -3' miRNA: 3'- ugCGGgUCGCGUAC---GCGC-UGUGaa-----CG- -5' |
|||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 33059 | 0.67 | 0.789227 |
Target: 5'- -gGaCUCGGCGCcgGggaCGCGGCGCUgGCg -3' miRNA: 3'- ugC-GGGUCGCGuaC---GCGCUGUGAaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home