miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 47453 0.73 0.443421
Target:  5'- gGCGCCCGGCccGCuUGCGCgGGgGCUggGCg -3'
miRNA:   3'- -UGCGGGUCG--CGuACGCG-CUgUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 64941 0.73 0.443421
Target:  5'- cCGCCCAgGgGCGcGUGCGGCACUgUGUa -3'
miRNA:   3'- uGCGGGU-CgCGUaCGCGCUGUGA-ACG- -5'
23711 3' -57.4 NC_005261.1 + 124084 0.73 0.443421
Target:  5'- -aGCCCGGCGCccGCGUaGCGCgcGCa -3'
miRNA:   3'- ugCGGGUCGCGuaCGCGcUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 135631 0.73 0.443421
Target:  5'- gGCGCCCuucauGCGCugcuaccUGCGCgGGCGCggGCg -3'
miRNA:   3'- -UGCGGGu----CGCGu------ACGCG-CUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 100734 0.73 0.425423
Target:  5'- cGCGCgCGcGCGCGgcggcGCGCGGCACgaGCu -3'
miRNA:   3'- -UGCGgGU-CGCGUa----CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 84968 0.73 0.425423
Target:  5'- gGCGUCgGGCGCGUcCGCGAUGCgccgGCg -3'
miRNA:   3'- -UGCGGgUCGCGUAcGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 52965 0.73 0.425423
Target:  5'- aGCGCC--GCGCcgGUGCGGCGCcgGCa -3'
miRNA:   3'- -UGCGGguCGCGuaCGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 62879 0.73 0.407867
Target:  5'- uAUGCgCGGCGCAgcccGCGCGAgGCgggGCg -3'
miRNA:   3'- -UGCGgGUCGCGUa---CGCGCUgUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 115201 0.73 0.416589
Target:  5'- -gGCCCAGCGCccGUGCguccGCGGCGCgaucgUGUc -3'
miRNA:   3'- ugCGGGUCGCG--UACG----CGCUGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 20456 0.73 0.416589
Target:  5'- gUGCCC-GCGCggGUGUGGCGCUuccuUGCg -3'
miRNA:   3'- uGCGGGuCGCGuaCGCGCUGUGA----ACG- -5'
23711 3' -57.4 NC_005261.1 + 31778 0.73 0.416589
Target:  5'- cGCGCCgCGGUGC-UGCccGCGGCGCagUGCg -3'
miRNA:   3'- -UGCGG-GUCGCGuACG--CGCUGUGa-ACG- -5'
23711 3' -57.4 NC_005261.1 + 53108 0.73 0.416589
Target:  5'- aGCGCCgCGGCGC-UGCGCGcCGCcaacaggGCg -3'
miRNA:   3'- -UGCGG-GUCGCGuACGCGCuGUGaa-----CG- -5'
23711 3' -57.4 NC_005261.1 + 48600 0.73 0.425423
Target:  5'- cACGCUCAcCGCGUGCGCGGC-CgcGCc -3'
miRNA:   3'- -UGCGGGUcGCGUACGCGCUGuGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 55039 0.73 0.425423
Target:  5'- -gGCCCcGCGCAgcUGCGCGGgGCcgGCg -3'
miRNA:   3'- ugCGGGuCGCGU--ACGCGCUgUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 118918 0.73 0.425423
Target:  5'- -gGUCCGGCGCcgcggGCGCGGCGCcgcGCg -3'
miRNA:   3'- ugCGGGUCGCGua---CGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 124620 0.73 0.425423
Target:  5'- cGCGUCCAGCgGCAucUGCGCGaagaagGCGCUggGCc -3'
miRNA:   3'- -UGCGGGUCG-CGU--ACGCGC------UGUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 131758 0.72 0.452579
Target:  5'- cACGCCggcCGGCGCGgcggGCGCGcCGCUggGCc -3'
miRNA:   3'- -UGCGG---GUCGCGUa---CGCGCuGUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 56409 0.72 0.452579
Target:  5'- gGCGCCCuGCGCuu-CGCGGCGCacccgccUGCg -3'
miRNA:   3'- -UGCGGGuCGCGuacGCGCUGUGa------ACG- -5'
23711 3' -57.4 NC_005261.1 + 83119 0.72 0.452579
Target:  5'- cCGCcgCCAGcCGCGcGCGCGGCACgcccUGCa -3'
miRNA:   3'- uGCG--GGUC-GCGUaCGCGCUGUGa---ACG- -5'
23711 3' -57.4 NC_005261.1 + 69421 0.72 0.459051
Target:  5'- cACGCgCCGGCGCAUcacggagacgggcaGCGCGGacgaGCUgcgGCg -3'
miRNA:   3'- -UGCG-GGUCGCGUA--------------CGCGCUg---UGAa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.