miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 91405 0.75 0.333231
Target:  5'- cGCGCCCGGCGaggacguggaGCGCGACGCcgccGCg -3'
miRNA:   3'- -UGCGGGUCGCgua-------CGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 3884 0.75 0.334742
Target:  5'- gGCGCgCAGCucgGCGaGCGCGGCGCggGCg -3'
miRNA:   3'- -UGCGgGUCG---CGUaCGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 53862 0.75 0.334742
Target:  5'- aGCGCuCCAGCGCG-GCGCGcGCGCUg-- -3'
miRNA:   3'- -UGCG-GGUCGCGUaCGCGC-UGUGAacg -5'
23711 3' -57.4 NC_005261.1 + 72938 0.75 0.342376
Target:  5'- uCGCgCAGCGCcgGCGCcGGCACcgGCu -3'
miRNA:   3'- uGCGgGUCGCGuaCGCG-CUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 57952 0.75 0.342376
Target:  5'- aGCGCCCGuguGCGCAcGCcgGCGACGCagGCg -3'
miRNA:   3'- -UGCGGGU---CGCGUaCG--CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 104993 0.75 0.350134
Target:  5'- gGCGCCCAGCGCGggcggcgGuCGgGGCGCcaggGCg -3'
miRNA:   3'- -UGCGGGUCGCGUa------C-GCgCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 95904 0.74 0.358017
Target:  5'- cGCGCCC-GCGCG-GCGCGcuCACUcGCg -3'
miRNA:   3'- -UGCGGGuCGCGUaCGCGCu-GUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 99344 0.74 0.358017
Target:  5'- cGCGCCCAGCaGCA-GCGCG-CACgUGa -3'
miRNA:   3'- -UGCGGGUCG-CGUaCGCGCuGUGaACg -5'
23711 3' -57.4 NC_005261.1 + 74082 0.74 0.358017
Target:  5'- -gGCCCGGCuuGUGCGCGAC-CUcGCc -3'
miRNA:   3'- ugCGGGUCGcgUACGCGCUGuGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 92582 0.74 0.366023
Target:  5'- cGCGCCCAcGCGCGaGCGCaGcCGCUcGCg -3'
miRNA:   3'- -UGCGGGU-CGCGUaCGCG-CuGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 105587 0.74 0.366023
Target:  5'- -gGCCUcggGGCGCGUGCGCGcgacgaACGCcUGCg -3'
miRNA:   3'- ugCGGG---UCGCGUACGCGC------UGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 106912 0.74 0.374152
Target:  5'- cGCGCCgCGGCGCGcUGCagggccgccaGCGACACgcGCa -3'
miRNA:   3'- -UGCGG-GUCGCGU-ACG----------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 71948 0.74 0.374152
Target:  5'- cGCGCCCcacuGGCGUcgGCGCGggGCGCggaGCg -3'
miRNA:   3'- -UGCGGG----UCGCGuaCGCGC--UGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 90407 0.74 0.390772
Target:  5'- gGCGCCCGGCGCGgacuaCGCGACguucgacguggGCggGCg -3'
miRNA:   3'- -UGCGGGUCGCGUac---GCGCUG-----------UGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 29201 0.74 0.399261
Target:  5'- gGCGCCC-GCGCGggcGCGCGACugggGCc -3'
miRNA:   3'- -UGCGGGuCGCGUa--CGCGCUGugaaCG- -5'
23711 3' -57.4 NC_005261.1 + 62879 0.73 0.407867
Target:  5'- uAUGCgCGGCGCAgcccGCGCGAgGCgggGCg -3'
miRNA:   3'- -UGCGgGUCGCGUa---CGCGCUgUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 115201 0.73 0.416589
Target:  5'- -gGCCCAGCGCccGUGCguccGCGGCGCgaucgUGUc -3'
miRNA:   3'- ugCGGGUCGCG--UACG----CGCUGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 20456 0.73 0.416589
Target:  5'- gUGCCC-GCGCggGUGUGGCGCUuccuUGCg -3'
miRNA:   3'- uGCGGGuCGCGuaCGCGCUGUGA----ACG- -5'
23711 3' -57.4 NC_005261.1 + 31778 0.73 0.416589
Target:  5'- cGCGCCgCGGUGC-UGCccGCGGCGCagUGCg -3'
miRNA:   3'- -UGCGG-GUCGCGuACG--CGCUGUGa-ACG- -5'
23711 3' -57.4 NC_005261.1 + 53108 0.73 0.416589
Target:  5'- aGCGCCgCGGCGC-UGCGCGcCGCcaacaggGCg -3'
miRNA:   3'- -UGCGG-GUCGCGuACGCGCuGUGaa-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.