Results 41 - 60 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 100734 | 0.73 | 0.425423 |
Target: 5'- cGCGCgCGcGCGCGgcggcGCGCGGCACgaGCu -3' miRNA: 3'- -UGCGgGU-CGCGUa----CGCGCUGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 84968 | 0.73 | 0.425423 |
Target: 5'- gGCGUCgGGCGCGUcCGCGAUGCgccgGCg -3' miRNA: 3'- -UGCGGgUCGCGUAcGCGCUGUGaa--CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 52965 | 0.73 | 0.425423 |
Target: 5'- aGCGCC--GCGCcgGUGCGGCGCcgGCa -3' miRNA: 3'- -UGCGGguCGCGuaCGCGCUGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 124620 | 0.73 | 0.425423 |
Target: 5'- cGCGUCCAGCgGCAucUGCGCGaagaagGCGCUggGCc -3' miRNA: 3'- -UGCGGGUCG-CGU--ACGCGC------UGUGAa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 118918 | 0.73 | 0.425423 |
Target: 5'- -gGUCCGGCGCcgcggGCGCGGCGCcgcGCg -3' miRNA: 3'- ugCGGGUCGCGua---CGCGCUGUGaa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 55039 | 0.73 | 0.425423 |
Target: 5'- -gGCCCcGCGCAgcUGCGCGGgGCcgGCg -3' miRNA: 3'- ugCGGGuCGCGU--ACGCGCUgUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 48600 | 0.73 | 0.425423 |
Target: 5'- cACGCUCAcCGCGUGCGCGGC-CgcGCc -3' miRNA: 3'- -UGCGGGUcGCGUACGCGCUGuGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 1893 | 0.73 | 0.428988 |
Target: 5'- cGCGCgCCAGCGCgcgccgcucaggccaGcGCGCGGCGCacUGCg -3' miRNA: 3'- -UGCG-GGUCGCG---------------UaCGCGCUGUGa-ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 30170 | 0.73 | 0.431673 |
Target: 5'- cGCGCCCGccGCGC-UGCGCGccgaggcggccgccGCGCUggagGCg -3' miRNA: 3'- -UGCGGGU--CGCGuACGCGC--------------UGUGAa---CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 89404 | 0.73 | 0.434368 |
Target: 5'- cCGCCggccuuccuCGGCGCGUGCGCGGcCGCcggGCu -3' miRNA: 3'- uGCGG---------GUCGCGUACGCGCU-GUGaa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 82161 | 0.73 | 0.434368 |
Target: 5'- cGCGCCagcaAGCGCG-GCGCGgaagGCGCggcgUGCg -3' miRNA: 3'- -UGCGGg---UCGCGUaCGCGC----UGUGa---ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 135631 | 0.73 | 0.443421 |
Target: 5'- gGCGCCCuucauGCGCugcuaccUGCGCgGGCGCggGCg -3' miRNA: 3'- -UGCGGGu----CGCGu------ACGCG-CUGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 124084 | 0.73 | 0.443421 |
Target: 5'- -aGCCCGGCGCccGCGUaGCGCgcGCa -3' miRNA: 3'- ugCGGGUCGCGuaCGCGcUGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 64941 | 0.73 | 0.443421 |
Target: 5'- cCGCCCAgGgGCGcGUGCGGCACUgUGUa -3' miRNA: 3'- uGCGGGU-CgCGUaCGCGCUGUGA-ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 47453 | 0.73 | 0.443421 |
Target: 5'- gGCGCCCGGCccGCuUGCGCgGGgGCUggGCg -3' miRNA: 3'- -UGCGGGUCG--CGuACGCG-CUgUGAa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 36619 | 0.73 | 0.443421 |
Target: 5'- uGCGcCCCGGCGCAcaaacgGCGCGAaGCcgGCg -3' miRNA: 3'- -UGC-GGGUCGCGUa-----CGCGCUgUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 75821 | 0.72 | 0.452579 |
Target: 5'- gUGCCCGGCGCGgccGCGCccggggaggGGCGCgcgGCg -3' miRNA: 3'- uGCGGGUCGCGUa--CGCG---------CUGUGaa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 131758 | 0.72 | 0.452579 |
Target: 5'- cACGCCggcCGGCGCGgcggGCGCGcCGCUggGCc -3' miRNA: 3'- -UGCGG---GUCGCGUa---CGCGCuGUGAa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 56409 | 0.72 | 0.452579 |
Target: 5'- gGCGCCCuGCGCuu-CGCGGCGCacccgccUGCg -3' miRNA: 3'- -UGCGGGuCGCGuacGCGCUGUGa------ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 83119 | 0.72 | 0.452579 |
Target: 5'- cCGCcgCCAGcCGCGcGCGCGGCACgcccUGCa -3' miRNA: 3'- uGCG--GGUC-GCGUaCGCGCUGUGa---ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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