miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 69421 0.72 0.459051
Target:  5'- cACGCgCCGGCGCAUcacggagacgggcaGCGCGGacgaGCUgcgGCg -3'
miRNA:   3'- -UGCG-GGUCGCGUA--------------CGCGCUg---UGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 93344 0.72 0.461839
Target:  5'- cGCGCgCAGCGCGcgcaGCGCG-CGCcagUGCg -3'
miRNA:   3'- -UGCGgGUCGCGUa---CGCGCuGUGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 23339 0.72 0.461839
Target:  5'- aGCGCgCGGCGCA-GCGCG-CGCgUGUc -3'
miRNA:   3'- -UGCGgGUCGCGUaCGCGCuGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 41121 0.72 0.461839
Target:  5'- -gGCCCgAGCGCuuccUGCGUGGCGCgcGCc -3'
miRNA:   3'- ugCGGG-UCGCGu---ACGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 104569 0.72 0.471199
Target:  5'- uCGCCCAGCGCugagggcUGCGCG-CGCaucGCc -3'
miRNA:   3'- uGCGGGUCGCGu------ACGCGCuGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 1646 0.72 0.471199
Target:  5'- aGC-CCCAGCGCcgcgcucUGCGCGGCcaugucCUUGCg -3'
miRNA:   3'- -UGcGGGUCGCGu------ACGCGCUGu-----GAACG- -5'
23711 3' -57.4 NC_005261.1 + 66279 0.72 0.471199
Target:  5'- gGCGCCCgcggcugucgcAGUGCGUcagGCGCGGCACg-GCc -3'
miRNA:   3'- -UGCGGG-----------UCGCGUA---CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 94157 0.72 0.471199
Target:  5'- aGCGCCCgggucgcgaaGGCGCccaccaGCGUGGCGCggUGCg -3'
miRNA:   3'- -UGCGGG----------UCGCGua----CGCGCUGUGa-ACG- -5'
23711 3' -57.4 NC_005261.1 + 49226 0.72 0.474969
Target:  5'- gGCGCCCAGCGCGcGCaggucggccgccgccGCGGCgGCgucgGCg -3'
miRNA:   3'- -UGCGGGUCGCGUaCG---------------CGCUG-UGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 16065 0.72 0.477807
Target:  5'- cGCGCcgagCCGGCGCGUGUagacgaaguacgcgGCGGCACcgGCg -3'
miRNA:   3'- -UGCG----GGUCGCGUACG--------------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 101632 0.72 0.480653
Target:  5'- cGCGCCgCGGcCGCGUcGCGCcGCACcgUGCu -3'
miRNA:   3'- -UGCGG-GUC-GCGUA-CGCGcUGUGa-ACG- -5'
23711 3' -57.4 NC_005261.1 + 81481 0.72 0.480653
Target:  5'- cCGCCCAGagcagggcCGCGgcuaGCGCGGCGCgcGCg -3'
miRNA:   3'- uGCGGGUC--------GCGUa---CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 64098 0.72 0.480653
Target:  5'- gGCGCCCacaaAGUGCGgcacGgGCGGCACgUGCc -3'
miRNA:   3'- -UGCGGG----UCGCGUa---CgCGCUGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 36154 0.72 0.480653
Target:  5'- cUGCUC-GCGCAUGCGCGGgGCUUu- -3'
miRNA:   3'- uGCGGGuCGCGUACGCGCUgUGAAcg -5'
23711 3' -57.4 NC_005261.1 + 102379 0.72 0.484461
Target:  5'- cGCGCuCCAGCGCG-GCGCGcagcuccucgcgccaGCGCUccuccUGCc -3'
miRNA:   3'- -UGCG-GGUCGCGUaCGCGC---------------UGUGA-----ACG- -5'
23711 3' -57.4 NC_005261.1 + 126951 0.72 0.490199
Target:  5'- gGCGCCgGGCGCggGgGCGGCAgc-GCg -3'
miRNA:   3'- -UGCGGgUCGCGuaCgCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 67081 0.72 0.499833
Target:  5'- uCGCUCGG-GCGguccaugGCGCGACGCggUGCg -3'
miRNA:   3'- uGCGGGUCgCGUa------CGCGCUGUGa-ACG- -5'
23711 3' -57.4 NC_005261.1 + 61228 0.72 0.499833
Target:  5'- cGCGCUCGGCGUucgGCGCGAgcucgacuCGCUgGCc -3'
miRNA:   3'- -UGCGGGUCGCGua-CGCGCU--------GUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 135444 0.71 0.509549
Target:  5'- cCGCCCAG-GCG-GCGCGgGCGCU-GCg -3'
miRNA:   3'- uGCGGGUCgCGUaCGCGC-UGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 35447 0.71 0.509549
Target:  5'- cCGCCCcGCGgGUcuagGCGCGGCGCgcGCg -3'
miRNA:   3'- uGCGGGuCGCgUA----CGCGCUGUGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.