miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 82343 0.71 0.519344
Target:  5'- aGCGCugCCGGCGCAcgucgGCGuCGGCGCgcGCg -3'
miRNA:   3'- -UGCG--GGUCGCGUa----CGC-GCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 32362 0.71 0.519344
Target:  5'- -gGCCCgcgggagacgcuGGUGCAgGCGCGGCGCggcgGCg -3'
miRNA:   3'- ugCGGG------------UCGCGUaCGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 134226 0.71 0.519344
Target:  5'- -gGCCggCAGCGUcgGCGUGGCGCacGCg -3'
miRNA:   3'- ugCGG--GUCGCGuaCGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 110229 0.71 0.519344
Target:  5'- gACGCcuCCAGCGUGggcgGCGCGGCGCccgggggGCu -3'
miRNA:   3'- -UGCG--GGUCGCGUa---CGCGCUGUGaa-----CG- -5'
23711 3' -57.4 NC_005261.1 + 100513 0.71 0.519344
Target:  5'- gGCGUCCAG-GUAgccGCGCGGCGCcaGCg -3'
miRNA:   3'- -UGCGGGUCgCGUa--CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 121064 0.71 0.529212
Target:  5'- gGCGCgCGGUGU--GCGCGGCGCcgGCg -3'
miRNA:   3'- -UGCGgGUCGCGuaCGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 59095 0.71 0.529212
Target:  5'- cGCGCCCucGCGCucgcagGCGCG-CGCgaGCu -3'
miRNA:   3'- -UGCGGGu-CGCGua----CGCGCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 29239 0.71 0.529212
Target:  5'- uACGCCgCGGCGCc-GCGCGACGg--GCc -3'
miRNA:   3'- -UGCGG-GUCGCGuaCGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 118260 0.71 0.529212
Target:  5'- gGCGUgCCGGUGCAcUGCGCG-CACUUcGUg -3'
miRNA:   3'- -UGCG-GGUCGCGU-ACGCGCuGUGAA-CG- -5'
23711 3' -57.4 NC_005261.1 + 75383 0.71 0.533179
Target:  5'- gACGCCCuGGCGCGcgccaucgacgaggGCGCGGCccgGCgcgUGCa -3'
miRNA:   3'- -UGCGGG-UCGCGUa-------------CGCGCUG---UGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 133636 0.71 0.539148
Target:  5'- cGCGCUCGccGCGCcgcUGCGCGAgCGCUgcgUGCu -3'
miRNA:   3'- -UGCGGGU--CGCGu--ACGCGCU-GUGA---ACG- -5'
23711 3' -57.4 NC_005261.1 + 113319 0.71 0.539148
Target:  5'- -gGCCCGGCuGCGcgagaaggucGCGCGGCACggGCu -3'
miRNA:   3'- ugCGGGUCG-CGUa---------CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 69624 0.71 0.539148
Target:  5'- cCGCCCGGCacgGCGUGCGC--UACcUGCg -3'
miRNA:   3'- uGCGGGUCG---CGUACGCGcuGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 32061 0.71 0.539148
Target:  5'- cAUGgCC-GCGCAgaGCGCGGCGCUgggGCu -3'
miRNA:   3'- -UGCgGGuCGCGUa-CGCGCUGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 118202 0.71 0.549147
Target:  5'- cGCGCCUgccGCGC-UGCGCGggGCGCUgacgGCc -3'
miRNA:   3'- -UGCGGGu--CGCGuACGCGC--UGUGAa---CG- -5'
23711 3' -57.4 NC_005261.1 + 109206 0.71 0.549147
Target:  5'- uGCGCa-GGCGCucguagGCGCGGCACgccGCg -3'
miRNA:   3'- -UGCGggUCGCGua----CGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 76451 0.71 0.549147
Target:  5'- cGCGCCCgacggcgacggcGGCGCcgGCGCGcGCGCg--- -3'
miRNA:   3'- -UGCGGG------------UCGCGuaCGCGC-UGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 71179 0.71 0.549147
Target:  5'- cGCGUCCgGGCGCAgcucgcgggGCGCGGCcaGCU-GCg -3'
miRNA:   3'- -UGCGGG-UCGCGUa--------CGCGCUG--UGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 22654 0.71 0.549147
Target:  5'- cGCGCUggCGGCGCcUGgGCGGCGCccgagUGCc -3'
miRNA:   3'- -UGCGG--GUCGCGuACgCGCUGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 118814 0.71 0.549147
Target:  5'- gGCGUCU-GCGCccuggGCGCGGCACUgccGCu -3'
miRNA:   3'- -UGCGGGuCGCGua---CGCGCUGUGAa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.