miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 59402 0.71 0.549147
Target:  5'- -aGCCCGGgcuCGCcgGCGCcGGCGCUgucGCg -3'
miRNA:   3'- ugCGGGUC---GCGuaCGCG-CUGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 32527 0.71 0.558195
Target:  5'- cGCGCCCGGCcCcgGCcccggccGCGGCGCggGCc -3'
miRNA:   3'- -UGCGGGUCGcGuaCG-------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 31327 0.71 0.559203
Target:  5'- cGCGCucgccgCCAGCGCGccgcUGCgGCGGCGCgugGCc -3'
miRNA:   3'- -UGCG------GGUCGCGU----ACG-CGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 46797 0.71 0.559203
Target:  5'- gGCGCCCGucgcggcgcGCGCGgaugGCGCGcgccagGCGCgcgUGCu -3'
miRNA:   3'- -UGCGGGU---------CGCGUa---CGCGC------UGUGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 30374 0.71 0.559203
Target:  5'- cGCGCCgGGCGC---CGCGGCGCggGUg -3'
miRNA:   3'- -UGCGGgUCGCGuacGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 2118 0.71 0.559203
Target:  5'- cACGCCCuGCGCGccgaGCGCGcuCACguccgGCg -3'
miRNA:   3'- -UGCGGGuCGCGUa---CGCGCu-GUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 88154 0.71 0.559203
Target:  5'- gGCGCCCcggccGCGCAgccgggccgGgGCGACGCcgGCg -3'
miRNA:   3'- -UGCGGGu----CGCGUa--------CgCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 53000 0.71 0.559203
Target:  5'- gGCGCCCAgGCGUcgGCGCagcucgccaGCGCUUccGCg -3'
miRNA:   3'- -UGCGGGU-CGCGuaCGCGc--------UGUGAA--CG- -5'
23711 3' -57.4 NC_005261.1 + 2169 0.71 0.559203
Target:  5'- -gGCCCAG-GCGUGCGaguCGGCGCUcaGCa -3'
miRNA:   3'- ugCGGGUCgCGUACGC---GCUGUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 102728 0.7 0.568297
Target:  5'- cGCGCCCGcCGCcaggGCGUucuucagGGCGCUUGCc -3'
miRNA:   3'- -UGCGGGUcGCGua--CGCG-------CUGUGAACG- -5'
23711 3' -57.4 NC_005261.1 + 72453 0.7 0.56931
Target:  5'- gGCGCCCgcggcgAGCGCGgcgaGCGCGAgCGCggccaGCg -3'
miRNA:   3'- -UGCGGG------UCGCGUa---CGCGCU-GUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 135767 0.7 0.56931
Target:  5'- uGCGCuCCGGCGCAgaGCGCGugcCGCUg-- -3'
miRNA:   3'- -UGCG-GGUCGCGUa-CGCGCu--GUGAacg -5'
23711 3' -57.4 NC_005261.1 + 34362 0.7 0.56931
Target:  5'- -gGCCgGGCGCc-GCGCGGCGCcgcGCg -3'
miRNA:   3'- ugCGGgUCGCGuaCGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 1583 0.7 0.56931
Target:  5'- aGCcCCCAGCGguUG-GCGGCGCggugGCu -3'
miRNA:   3'- -UGcGGGUCGCguACgCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 126128 0.7 0.56931
Target:  5'- -aGCCCAGCGCu--CGCGGCAa--GCu -3'
miRNA:   3'- ugCGGGUCGCGuacGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 71413 0.7 0.578444
Target:  5'- gGCGUCCGGCGCGggGCccggcccgggcccGCGGCGCgcaGCc -3'
miRNA:   3'- -UGCGGGUCGCGUa-CG-------------CGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 77664 0.7 0.579461
Target:  5'- gGCGCCUgcaGGCGCAggGCGCGG-ACggGCc -3'
miRNA:   3'- -UGCGGG---UCGCGUa-CGCGCUgUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 130621 0.7 0.579461
Target:  5'- uGCGCCuucaaCAGCGC--GCGgGGCGCgcgUGCg -3'
miRNA:   3'- -UGCGG-----GUCGCGuaCGCgCUGUGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 47940 0.7 0.579461
Target:  5'- cGCGCgCCGcGCGCGaGCGCGuucACGCU-GCg -3'
miRNA:   3'- -UGCG-GGU-CGCGUaCGCGC---UGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 47674 0.7 0.58965
Target:  5'- aGCGCCgAGCGCAgcacgGCcgcccGCGGCGCc-GCg -3'
miRNA:   3'- -UGCGGgUCGCGUa----CG-----CGCUGUGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.