miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 47674 0.7 0.58965
Target:  5'- aGCGCCgAGCGCAgcacgGCcgcccGCGGCGCc-GCg -3'
miRNA:   3'- -UGCGGgUCGCGUa----CG-----CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 68267 0.7 0.58965
Target:  5'- gGCGCgCCuGCGCccGCGCGGCGgg-GCc -3'
miRNA:   3'- -UGCG-GGuCGCGuaCGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 108747 0.7 0.58965
Target:  5'- gGCGCCgCGGCGUc--CGCGGCGCgccGCg -3'
miRNA:   3'- -UGCGG-GUCGCGuacGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 46139 0.7 0.59987
Target:  5'- cCGCCCGagaaCGCcgaGCGCGGCACU-GCg -3'
miRNA:   3'- uGCGGGUc---GCGua-CGCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 120962 0.7 0.59987
Target:  5'- cGCGCCCcgcggGGCGCGUGC-CGcCGCagGCc -3'
miRNA:   3'- -UGCGGG-----UCGCGUACGcGCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 107644 0.7 0.59987
Target:  5'- aGCGCCC-GCGC-UGCGCG-CGCa--- -3'
miRNA:   3'- -UGCGGGuCGCGuACGCGCuGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 101769 0.7 0.59987
Target:  5'- cACGCCCGccuccagcGCGCGUGCcgcccgGCGGgGCU-GCg -3'
miRNA:   3'- -UGCGGGU--------CGCGUACG------CGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 74956 0.7 0.59987
Target:  5'- cGCGCUCGGCGCGcucgaggccGCGCGcccGCGCcgggUGCa -3'
miRNA:   3'- -UGCGGGUCGCGUa--------CGCGC---UGUGa---ACG- -5'
23711 3' -57.4 NC_005261.1 + 28772 0.7 0.59987
Target:  5'- gGCGCCUGGgcCGCG-GCGCGgGCGCUcGCg -3'
miRNA:   3'- -UGCGGGUC--GCGUaCGCGC-UGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 16958 0.7 0.59987
Target:  5'- gGCGCaCCGGCcccacaGCGUGCGCccCACcUGCg -3'
miRNA:   3'- -UGCG-GGUCG------CGUACGCGcuGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 106391 0.7 0.610115
Target:  5'- cCGCCgcuguCGGCGaCAUccGCGCGGCGCU-GCa -3'
miRNA:   3'- uGCGG-----GUCGC-GUA--CGCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 104730 0.7 0.610115
Target:  5'- cGCGUCguGcCGCGUGCGCG-CGCcguucUGCa -3'
miRNA:   3'- -UGCGGguC-GCGUACGCGCuGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 64893 0.7 0.610115
Target:  5'- aGCGCCggguccagCAGCGCGUgguucaGCGCGGCguGCUccUGCu -3'
miRNA:   3'- -UGCGG--------GUCGCGUA------CGCGCUG--UGA--ACG- -5'
23711 3' -57.4 NC_005261.1 + 53719 0.7 0.610115
Target:  5'- cGCGgCCAGCuGCG-GCGCGcccGCACggGCg -3'
miRNA:   3'- -UGCgGGUCG-CGUaCGCGC---UGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 4518 0.7 0.610115
Target:  5'- cGCGCCC-GCGCGggcGcCGCGGCGaggGCg -3'
miRNA:   3'- -UGCGGGuCGCGUa--C-GCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 2548 0.7 0.610115
Target:  5'- aGCGCCgCGGCGCuggGCGCGG-GCgUGUg -3'
miRNA:   3'- -UGCGG-GUCGCGua-CGCGCUgUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 5119 0.7 0.610115
Target:  5'- -aGCUCGGCGCggGCGgcccgcCGGCGCUcGCg -3'
miRNA:   3'- ugCGGGUCGCGuaCGC------GCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 133946 0.7 0.610115
Target:  5'- uGCGCCaggcgCGGCGCAUGUuCGGCcUUUGCc -3'
miRNA:   3'- -UGCGG-----GUCGCGUACGcGCUGuGAACG- -5'
23711 3' -57.4 NC_005261.1 + 120414 0.7 0.614218
Target:  5'- uGCGCUgAGCGgccugggcuggugaaCAUGCGCGGCG--UGCg -3'
miRNA:   3'- -UGCGGgUCGC---------------GUACGCGCUGUgaACG- -5'
23711 3' -57.4 NC_005261.1 + 31597 0.7 0.619349
Target:  5'- cGCGCUCGGCGCGcagggcgugcugcUGCucGCGACGCgggaccugGCc -3'
miRNA:   3'- -UGCGGGUCGCGU-------------ACG--CGCUGUGaa------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.