miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 57658 0.66 0.832246
Target:  5'- cACGCCCccgagacugcgcgAGCGCcagccgGCGgGGCACaggGCc -3'
miRNA:   3'- -UGCGGG-------------UCGCGua----CGCgCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 52449 0.66 0.83057
Target:  5'- cACGaggucCCCGGCGCGcgucaggaugcgguUGCgGCGGCAUcgGCu -3'
miRNA:   3'- -UGC-----GGGUCGCGU--------------ACG-CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 42241 0.66 0.829729
Target:  5'- cGCGCgCAGCGCcucgaacugcccGCGCGAgGCggccGCg -3'
miRNA:   3'- -UGCGgGUCGCGua----------CGCGCUgUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 57505 0.66 0.828042
Target:  5'- cACGuCCCGGCGgcgggccuucuuccaCAggcacgGCGCGGCGCacggGCa -3'
miRNA:   3'- -UGC-GGGUCGC---------------GUa-----CGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 93550 0.66 0.824647
Target:  5'- cCGCCCAGUagcggucgacgGCGgugcgGCGgGACGCgaucGCg -3'
miRNA:   3'- uGCGGGUCG-----------CGUa----CGCgCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 76870 0.66 0.824647
Target:  5'- gGCGCCCGGCGaggagGCcGaCGGCACg--- -3'
miRNA:   3'- -UGCGGGUCGCgua--CG-C-GCUGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 108411 0.66 0.824647
Target:  5'- cGCGCCaccGCGCcUGCGUG-CACg-GCa -3'
miRNA:   3'- -UGCGGgu-CGCGuACGCGCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 106218 0.66 0.824647
Target:  5'- aGCGCCCgcGGcCGCcugGCGCGGC-CgccGCg -3'
miRNA:   3'- -UGCGGG--UC-GCGua-CGCGCUGuGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 45998 0.66 0.824647
Target:  5'- gGCGCCa--UGUGUGCGCGGCAg--GCg -3'
miRNA:   3'- -UGCGGgucGCGUACGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 87042 0.66 0.824647
Target:  5'- cGCGUCCAG-GC-UGCGC-ACACgcaGCg -3'
miRNA:   3'- -UGCGGGUCgCGuACGCGcUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 124270 0.66 0.824647
Target:  5'- cCGCCCGcGCGCcccgGcCGCGACAaaaaaugGCa -3'
miRNA:   3'- uGCGGGU-CGCGua--C-GCGCUGUgaa----CG- -5'
23711 3' -57.4 NC_005261.1 + 17804 0.66 0.824647
Target:  5'- uCGCCgGucucGCGCAUGCG-GGCG-UUGCa -3'
miRNA:   3'- uGCGGgU----CGCGUACGCgCUGUgAACG- -5'
23711 3' -57.4 NC_005261.1 + 83704 0.66 0.824647
Target:  5'- gGCGCCgcagcCAGCGCAccaugaGCGCGuuuaGCUUGa -3'
miRNA:   3'- -UGCGG-----GUCGCGUa-----CGCGCug--UGAACg -5'
23711 3' -57.4 NC_005261.1 + 129193 0.66 0.824647
Target:  5'- -aGgCCAGCGCGUgGCGCaGCuGCUucUGCu -3'
miRNA:   3'- ugCgGGUCGCGUA-CGCGcUG-UGA--ACG- -5'
23711 3' -57.4 NC_005261.1 + 81277 0.66 0.816036
Target:  5'- cCGCCUgcgcgagccggAGCGCG-GCGCG-CACguccgUGCc -3'
miRNA:   3'- uGCGGG-----------UCGCGUaCGCGCuGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 10889 0.66 0.816036
Target:  5'- -aGCCCGGCGCcaacgGCGgCGGCGgcaGCg -3'
miRNA:   3'- ugCGGGUCGCGua---CGC-GCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 94886 0.66 0.816036
Target:  5'- -gGCCCGcGUGCAgccacacGCGCG-CGCUggagGCg -3'
miRNA:   3'- ugCGGGU-CGCGUa------CGCGCuGUGAa---CG- -5'
23711 3' -57.4 NC_005261.1 + 113043 0.66 0.816036
Target:  5'- cGCGCgCGGCGUG-GCGCGccacCGCUcGCu -3'
miRNA:   3'- -UGCGgGUCGCGUaCGCGCu---GUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 122645 0.66 0.816036
Target:  5'- -gGCCCGGCGCGcguacguggGCGCGAagaGCa--- -3'
miRNA:   3'- ugCGGGUCGCGUa--------CGCGCUg--UGaacg -5'
23711 3' -57.4 NC_005261.1 + 90220 0.66 0.816036
Target:  5'- aGCGCCCucGCGCGgcggGCG-GGCGCg--- -3'
miRNA:   3'- -UGCGGGu-CGCGUa---CGCgCUGUGaacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.