miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 99734 0.66 0.816036
Target:  5'- cGCGUCaGGCGCGUGCcGCcACACggccaGCa -3'
miRNA:   3'- -UGCGGgUCGCGUACG-CGcUGUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 81277 0.66 0.816036
Target:  5'- cCGCCUgcgcgagccggAGCGCG-GCGCG-CACguccgUGCc -3'
miRNA:   3'- uGCGGG-----------UCGCGUaCGCGCuGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 83366 0.66 0.816036
Target:  5'- gGCGUCCacgucggcgAGCGCGgcgaGCGCGGC-CUcgGCc -3'
miRNA:   3'- -UGCGGG---------UCGCGUa---CGCGCUGuGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 113043 0.66 0.816036
Target:  5'- cGCGCgCGGCGUG-GCGCGccacCGCUcGCu -3'
miRNA:   3'- -UGCGgGUCGCGUaCGCGCu---GUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 94886 0.66 0.816036
Target:  5'- -gGCCCGcGUGCAgccacacGCGCG-CGCUggagGCg -3'
miRNA:   3'- ugCGGGU-CGCGUa------CGCGCuGUGAa---CG- -5'
23711 3' -57.4 NC_005261.1 + 72885 0.66 0.816036
Target:  5'- cCGCCCcGcCGCcgGgguagagcuCGCGGCACUUGa -3'
miRNA:   3'- uGCGGGuC-GCGuaC---------GCGCUGUGAACg -5'
23711 3' -57.4 NC_005261.1 + 74155 0.66 0.815166
Target:  5'- --uCCCAGCgggGCAUGCGCGugcucaaggugacGCGCcUGCc -3'
miRNA:   3'- ugcGGGUCG---CGUACGCGC-------------UGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 65153 0.66 0.815166
Target:  5'- cCGCgCCAGCGCGcagaaggUGCGCu-CGCU-GCc -3'
miRNA:   3'- uGCG-GGUCGCGU-------ACGCGcuGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 46492 0.66 0.815166
Target:  5'- gGCGCCCuccgcggGGCGCAgcccgGCGUcGCGCa-GCa -3'
miRNA:   3'- -UGCGGG-------UCGCGUa----CGCGcUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 53290 0.66 0.813419
Target:  5'- gGCGCCaAGCGCccccGUGCGCGGgucgaucaggaggcCGCaggugUGCg -3'
miRNA:   3'- -UGCGGgUCGCG----UACGCGCU--------------GUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 93264 0.66 0.807257
Target:  5'- gGCGCgCCAGCGC--GCGCcuccaACACcgGCa -3'
miRNA:   3'- -UGCG-GGUCGCGuaCGCGc----UGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 127778 0.66 0.807257
Target:  5'- gACGCCCGGCuGCucgagcgGCGggcCGGCGCcgcgGCg -3'
miRNA:   3'- -UGCGGGUCG-CGua-----CGC---GCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 3003 0.66 0.807257
Target:  5'- -gGCCCGGCGCcgGgGCuccCGCggGCc -3'
miRNA:   3'- ugCGGGUCGCGuaCgCGcu-GUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 108157 0.66 0.807257
Target:  5'- cCGCCugCAGCGCGUccgccagggcGCGCGGC-CgcgGCu -3'
miRNA:   3'- uGCGG--GUCGCGUA----------CGCGCUGuGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 30315 0.66 0.807257
Target:  5'- -aGCCCgccggcggaAGUGCcgGCGCGGCug--GCg -3'
miRNA:   3'- ugCGGG---------UCGCGuaCGCGCUGugaaCG- -5'
23711 3' -57.4 NC_005261.1 + 43129 0.66 0.807257
Target:  5'- cGCGCCUAcacaCGCGcGCGCGGC-CU-GCg -3'
miRNA:   3'- -UGCGGGUc---GCGUaCGCGCUGuGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 67657 0.66 0.807257
Target:  5'- cCGCCCGucCGC--GCGCGGCGCcagGCg -3'
miRNA:   3'- uGCGGGUc-GCGuaCGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 45656 0.66 0.807257
Target:  5'- gUGCCCAGCGg--GCGUGAUcaACgcGCg -3'
miRNA:   3'- uGCGGGUCGCguaCGCGCUG--UGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 96549 0.66 0.807257
Target:  5'- uAC-CCCAGCaGCAUGCGUaGCGCgaauaUGUc -3'
miRNA:   3'- -UGcGGGUCG-CGUACGCGcUGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 131190 0.66 0.807257
Target:  5'- uACGCCCgcGGCGCGgucGCcGCcGGCGCgcccGCg -3'
miRNA:   3'- -UGCGGG--UCGCGUa--CG-CG-CUGUGaa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.