miRNA display CGI


Results 81 - 100 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 14968 0.67 0.789227
Target:  5'- gUGCCUGGgGCGacUGCGCGGcCGCgccgGCc -3'
miRNA:   3'- uGCGGGUCgCGU--ACGCGCU-GUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 115267 0.67 0.789227
Target:  5'- cACGCCgCcGCGCGUcUGgGACGCggGCa -3'
miRNA:   3'- -UGCGG-GuCGCGUAcGCgCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 33059 0.67 0.789227
Target:  5'- -gGaCUCGGCGCcgGggaCGCGGCGCUgGCg -3'
miRNA:   3'- ugC-GGGUCGCGuaC---GCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 47066 0.67 0.789227
Target:  5'- -gGCCgAGCGCGUGguaCGCGuGCACgccgaagGCg -3'
miRNA:   3'- ugCGGgUCGCGUAC---GCGC-UGUGaa-----CG- -5'
23711 3' -57.4 NC_005261.1 + 74766 0.67 0.789227
Target:  5'- cGCGCCacaGGCGCGgagGU-CGACGCgcGCa -3'
miRNA:   3'- -UGCGGg--UCGCGUa--CGcGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 121686 0.67 0.789227
Target:  5'- gGCGCCCuccagguuGCGCAUggagGCGUaGACGCcgacgGCg -3'
miRNA:   3'- -UGCGGGu-------CGCGUA----CGCG-CUGUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 9173 0.67 0.789227
Target:  5'- cCGCCCGGCcagguaCGUGgGCGgggACACcUUGCu -3'
miRNA:   3'- uGCGGGUCGc-----GUACgCGC---UGUG-AACG- -5'
23711 3' -57.4 NC_005261.1 + 83499 0.67 0.789227
Target:  5'- aGCGCCaGGCGCGcGCgccgguggaaGCGGCACgcGCc -3'
miRNA:   3'- -UGCGGgUCGCGUaCG----------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 51203 0.67 0.78831
Target:  5'- cACGCCCccgGGCGCGcugcugcUGgGCG-CGCUaGCc -3'
miRNA:   3'- -UGCGGG---UCGCGU-------ACgCGCuGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 86483 0.67 0.78831
Target:  5'- gACGCggccgggCCGGCGCcUGUcuGCGGCagggGCUUGCc -3'
miRNA:   3'- -UGCG-------GGUCGCGuACG--CGCUG----UGAACG- -5'
23711 3' -57.4 NC_005261.1 + 57565 0.67 0.779995
Target:  5'- cGCGCCCGGCuccggcgccGCGUugaGCGCGuCGaugUGCc -3'
miRNA:   3'- -UGCGGGUCG---------CGUA---CGCGCuGUga-ACG- -5'
23711 3' -57.4 NC_005261.1 + 96602 0.67 0.779995
Target:  5'- cUGCCgCAGCaCGUcGCGCGugGCgcGCa -3'
miRNA:   3'- uGCGG-GUCGcGUA-CGCGCugUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 11968 0.67 0.779995
Target:  5'- cGCGCuCCAGCGCAgcagccGCGUGuCGaucgGCu -3'
miRNA:   3'- -UGCG-GGUCGCGUa-----CGCGCuGUgaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 65816 0.67 0.779995
Target:  5'- gUGCCCGG-GCGgcgGCGCGAaGCU-GCc -3'
miRNA:   3'- uGCGGGUCgCGUa--CGCGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 57432 0.67 0.779995
Target:  5'- -aGCCCAggauGCGCAcccGCGCGACgGCguccGCg -3'
miRNA:   3'- ugCGGGU----CGCGUa--CGCGCUG-UGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 90883 0.67 0.779995
Target:  5'- cGCGCUgGGCGaCGgcaugGCGCGGCAgguCUcgGCg -3'
miRNA:   3'- -UGCGGgUCGC-GUa----CGCGCUGU---GAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 20274 0.67 0.779995
Target:  5'- cCGCCgGGU-CGUGuCGCGggggcGCGCUUGCg -3'
miRNA:   3'- uGCGGgUCGcGUAC-GCGC-----UGUGAACG- -5'
23711 3' -57.4 NC_005261.1 + 59577 0.67 0.779995
Target:  5'- cGCGCCgCAGCGgGUGCcGCGcCGCc--- -3'
miRNA:   3'- -UGCGG-GUCGCgUACG-CGCuGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 108485 0.67 0.779995
Target:  5'- gGCGCgCAcGCGCGc-CGCGACGCUacccGCg -3'
miRNA:   3'- -UGCGgGU-CGCGUacGCGCUGUGAa---CG- -5'
23711 3' -57.4 NC_005261.1 + 1283 0.67 0.779995
Target:  5'- gGCGCCCAG-GCcgGCGgGGCucccguCgccgGCg -3'
miRNA:   3'- -UGCGGGUCgCGuaCGCgCUGu-----Gaa--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.