Results 101 - 120 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 70470 | 0.67 | 0.770628 |
Target: 5'- -aGCCCGcgccGCGgGUGCGCG-CGCgugaGCa -3' miRNA: 3'- ugCGGGU----CGCgUACGCGCuGUGaa--CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 2406 | 0.67 | 0.770628 |
Target: 5'- cGCGCCCGcGgGCcccGCGCGGCGgCggGCc -3' miRNA: 3'- -UGCGGGU-CgCGua-CGCGCUGU-GaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 76009 | 0.67 | 0.770628 |
Target: 5'- gACGCCCuGGCGCc-GCGCaGCGCc-GCg -3' miRNA: 3'- -UGCGGG-UCGCGuaCGCGcUGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 70830 | 0.67 | 0.770628 |
Target: 5'- gGCGCgCCGGCGC--GCGCGuACGCc--- -3' miRNA: 3'- -UGCG-GGUCGCGuaCGCGC-UGUGaacg -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 109466 | 0.67 | 0.770628 |
Target: 5'- cCGCUUcGCGCGUGCGCGcC-CgaGCg -3' miRNA: 3'- uGCGGGuCGCGUACGCGCuGuGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 106705 | 0.67 | 0.770628 |
Target: 5'- cGCGuCCCAGCGC-UGCaggaaGCGGCccACcucgUGCa -3' miRNA: 3'- -UGC-GGGUCGCGuACG-----CGCUG--UGa---ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 37779 | 0.67 | 0.766846 |
Target: 5'- gGCGCCCcaacggacucccCGCGUGCGUGACGac-GCu -3' miRNA: 3'- -UGCGGGuc----------GCGUACGCGCUGUgaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 96332 | 0.67 | 0.761137 |
Target: 5'- -gGCCUGGCGCGgccGCGCG-CACcUGa -3' miRNA: 3'- ugCGGGUCGCGUa--CGCGCuGUGaACg -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 82956 | 0.67 | 0.761137 |
Target: 5'- gGCGCCgGGCGgAagacguggUGCGCGucgaGCACggagGCg -3' miRNA: 3'- -UGCGGgUCGCgU--------ACGCGC----UGUGaa--CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 76495 | 0.67 | 0.761137 |
Target: 5'- -aGCCCucGGCGCucGCGCG-CGCgaGCa -3' miRNA: 3'- ugCGGG--UCGCGuaCGCGCuGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 57268 | 0.67 | 0.761137 |
Target: 5'- cACGCUC--CGCAUcGCGCGGCAgcUGCu -3' miRNA: 3'- -UGCGGGucGCGUA-CGCGCUGUgaACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 93462 | 0.67 | 0.761137 |
Target: 5'- gGC-CCCAGCGCGgugccgggGCGCGcguCGCccGCg -3' miRNA: 3'- -UGcGGGUCGCGUa-------CGCGCu--GUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 107872 | 0.67 | 0.761137 |
Target: 5'- cCGCCCGcGCGCucgcgccCGCGGCccGCUUGUc -3' miRNA: 3'- uGCGGGU-CGCGuac----GCGCUG--UGAACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 86892 | 0.67 | 0.761137 |
Target: 5'- cGCGCCCuGGUcCGcGCGCGGCGCggacccGCg -3' miRNA: 3'- -UGCGGG-UCGcGUaCGCGCUGUGaa----CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 111843 | 0.67 | 0.761137 |
Target: 5'- uCGCggAGCGCGUGCGCGcCAaccGCg -3' miRNA: 3'- uGCGggUCGCGUACGCGCuGUgaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 132361 | 0.67 | 0.761137 |
Target: 5'- cCGCCgCGGCGCGcuCGCcGCGCUcGCg -3' miRNA: 3'- uGCGG-GUCGCGUacGCGcUGUGAaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 108566 | 0.67 | 0.761137 |
Target: 5'- cACGUCguGCGaCGUGCGCG-CGaagGCg -3' miRNA: 3'- -UGCGGguCGC-GUACGCGCuGUgaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 96989 | 0.67 | 0.761137 |
Target: 5'- -gGCCuCGGCGCGgcuaaGCGCGcCAUUggGCg -3' miRNA: 3'- ugCGG-GUCGCGUa----CGCGCuGUGAa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 135095 | 0.67 | 0.761137 |
Target: 5'- -gGCCCGGCgGCGgaGCGCGAgGCggaccccGCg -3' miRNA: 3'- ugCGGGUCG-CGUa-CGCGCUgUGaa-----CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 62508 | 0.67 | 0.758267 |
Target: 5'- -gGCCCguguucugcaggaaGGCGCc-GCGCGGCAUggGCc -3' miRNA: 3'- ugCGGG--------------UCGCGuaCGCGCUGUGaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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