miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 9173 0.67 0.789227
Target:  5'- cCGCCCGGCcagguaCGUGgGCGgggACACcUUGCu -3'
miRNA:   3'- uGCGGGUCGc-----GUACgCGC---UGUG-AACG- -5'
23711 3' -57.4 NC_005261.1 + 9974 0.69 0.651181
Target:  5'- cCGCCCccccggacGCGCcucgGCGCGGCcacccGCUUGCc -3'
miRNA:   3'- uGCGGGu-------CGCGua--CGCGCUG-----UGAACG- -5'
23711 3' -57.4 NC_005261.1 + 10889 0.66 0.816036
Target:  5'- -aGCCCGGCGCcaacgGCGgCGGCGgcaGCg -3'
miRNA:   3'- ugCGGGUCGCGua---CGC-GCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 11968 0.67 0.779995
Target:  5'- cGCGCuCCAGCGCAgcagccGCGUGuCGaucgGCu -3'
miRNA:   3'- -UGCG-GGUCGCGUa-----CGCGCuGUgaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 12085 0.69 0.671655
Target:  5'- cCGCgCCGGgGCGgcucaaagGCGCGGCGCcaGCu -3'
miRNA:   3'- uGCG-GGUCgCGUa-------CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 12314 0.68 0.702101
Target:  5'- gGCGCgUAGCcgGCggGCGCG-CGCUUGg -3'
miRNA:   3'- -UGCGgGUCG--CGuaCGCGCuGUGAACg -5'
23711 3' -57.4 NC_005261.1 + 13327 0.66 0.841332
Target:  5'- aGCGCCCu-CGCAcucGCGCGGCcaGCggucgGCg -3'
miRNA:   3'- -UGCGGGucGCGUa--CGCGCUG--UGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 14528 0.69 0.630646
Target:  5'- -aGCCCGGCGgugGCGCGGcCGCccgGCg -3'
miRNA:   3'- ugCGGGUCGCguaCGCGCU-GUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 14968 0.67 0.789227
Target:  5'- gUGCCUGGgGCGacUGCGCGGcCGCgccgGCc -3'
miRNA:   3'- uGCGGGUCgCGU--ACGCGCU-GUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 15380 0.66 0.798318
Target:  5'- gGCGCCCucGGCGCcgccgucgAUGC-CGACGC--GCa -3'
miRNA:   3'- -UGCGGG--UCGCG--------UACGcGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 16065 0.72 0.477807
Target:  5'- cGCGCcgagCCGGCGCGUGUagacgaaguacgcgGCGGCACcgGCg -3'
miRNA:   3'- -UGCG----GGUCGCGUACG--------------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 16958 0.7 0.59987
Target:  5'- gGCGCaCCGGCcccacaGCGUGCGCccCACcUGCg -3'
miRNA:   3'- -UGCG-GGUCG------CGUACGCGcuGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 17804 0.66 0.824647
Target:  5'- uCGCCgGucucGCGCAUGCG-GGCG-UUGCa -3'
miRNA:   3'- uGCGGgU----CGCGUACGCgCUGUgAACG- -5'
23711 3' -57.4 NC_005261.1 + 19076 0.68 0.691999
Target:  5'- gGCuCUCGGCGCGUGCuuGCGugGCguuggaagUUGCg -3'
miRNA:   3'- -UGcGGGUCGCGUACG--CGCugUG--------AACG- -5'
23711 3' -57.4 NC_005261.1 + 19833 0.68 0.681848
Target:  5'- -aGUUCAGCGCGcGCGCGGCGucCUcgGCu -3'
miRNA:   3'- ugCGGGUCGCGUaCGCGCUGU--GAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 20274 0.67 0.779995
Target:  5'- cCGCCgGGU-CGUGuCGCGggggcGCGCUUGCg -3'
miRNA:   3'- uGCGGgUCGcGUAC-GCGC-----UGUGAACG- -5'
23711 3' -57.4 NC_005261.1 + 20456 0.73 0.416589
Target:  5'- gUGCCC-GCGCggGUGUGGCGCUuccuUGCg -3'
miRNA:   3'- uGCGGGuCGCGuaCGCGCUGUGA----ACG- -5'
23711 3' -57.4 NC_005261.1 + 21768 0.69 0.66143
Target:  5'- cGCGCCgGGCGagccGcCGCGGCGCggGCc -3'
miRNA:   3'- -UGCGGgUCGCgua-C-GCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 22654 0.71 0.549147
Target:  5'- cGCGCUggCGGCGCcUGgGCGGCGCccgagUGCc -3'
miRNA:   3'- -UGCGG--GUCGCGuACgCGCUGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 23339 0.72 0.461839
Target:  5'- aGCGCgCGGCGCA-GCGCG-CGCgUGUc -3'
miRNA:   3'- -UGCGgGUCGCGUaCGCGCuGUGaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.