miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 28582 0.66 0.807257
Target:  5'- gGCGCgCgAGCGCcgGCGgGcCGCccGCg -3'
miRNA:   3'- -UGCG-GgUCGCGuaCGCgCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 28772 0.7 0.59987
Target:  5'- gGCGCCUGGgcCGCG-GCGCGgGCGCUcGCg -3'
miRNA:   3'- -UGCGGGUC--GCGUaCGCGC-UGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 29201 0.74 0.399261
Target:  5'- gGCGCCC-GCGCGggcGCGCGACugggGCc -3'
miRNA:   3'- -UGCGGGuCGCGUa--CGCGCUGugaaCG- -5'
23711 3' -57.4 NC_005261.1 + 29239 0.71 0.529212
Target:  5'- uACGCCgCGGCGCc-GCGCGACGg--GCc -3'
miRNA:   3'- -UGCGG-GUCGCGuaCGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 29329 0.8 0.176287
Target:  5'- cCGCCCGGcCGCGUGCGCuucggcggcgcgggcGACACUcGCg -3'
miRNA:   3'- uGCGGGUC-GCGUACGCG---------------CUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 29523 0.66 0.807257
Target:  5'- -gGCCUGGCuGCAgaGCGCGAaGCUcGCg -3'
miRNA:   3'- ugCGGGUCG-CGUa-CGCGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 29551 0.68 0.722116
Target:  5'- -gGCCCggaccugcagcuGGCGCGccugcUGCaGCGGCGCgUGCa -3'
miRNA:   3'- ugCGGG------------UCGCGU-----ACG-CGCUGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 29806 0.68 0.712142
Target:  5'- gGCGCCggCGGCGCGggcgcccGCGCcGCGCUcGCc -3'
miRNA:   3'- -UGCGG--GUCGCGUa------CGCGcUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 29848 0.68 0.732011
Target:  5'- cGCGCCguGCucGCcggccGCGCGGCGCcgGCg -3'
miRNA:   3'- -UGCGGguCG--CGua---CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 29892 0.69 0.671655
Target:  5'- aGCGCCCgggcccgcggcAGCGCGcgagcggcUGCGCGA-GCUgGCg -3'
miRNA:   3'- -UGCGGG-----------UCGCGU--------ACGCGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 29982 0.68 0.716141
Target:  5'- uGCGCCgcCGGCGCGUccgGCaGCGGCGCgucugagcucccggUGCu -3'
miRNA:   3'- -UGCGG--GUCGCGUA---CG-CGCUGUGa-------------ACG- -5'
23711 3' -57.4 NC_005261.1 + 30120 0.66 0.816036
Target:  5'- cUGCUUGGCGCGgccCGCGACGCgguggaGCg -3'
miRNA:   3'- uGCGGGUCGCGUac-GCGCUGUGaa----CG- -5'
23711 3' -57.4 NC_005261.1 + 30170 0.73 0.431673
Target:  5'- cGCGCCCGccGCGC-UGCGCGccgaggcggccgccGCGCUggagGCg -3'
miRNA:   3'- -UGCGGGU--CGCGuACGCGC--------------UGUGAa---CG- -5'
23711 3' -57.4 NC_005261.1 + 30239 0.68 0.681848
Target:  5'- -gGCCCcgcuGGCGCGguacucgacGCGCGGCGCggcgGCc -3'
miRNA:   3'- ugCGGG----UCGCGUa--------CGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 30315 0.66 0.807257
Target:  5'- -aGCCCgccggcggaAGUGCcgGCGCGGCug--GCg -3'
miRNA:   3'- ugCGGG---------UCGCGuaCGCGCUGugaaCG- -5'
23711 3' -57.4 NC_005261.1 + 30374 0.71 0.559203
Target:  5'- cGCGCCgGGCGC---CGCGGCGCggGUg -3'
miRNA:   3'- -UGCGGgUCGCGuacGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 31016 0.68 0.732011
Target:  5'- -gGCCCGGCGCcgGCcaaaagcCGGCGCgccGCc -3'
miRNA:   3'- ugCGGGUCGCGuaCGc------GCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 31168 0.82 0.115454
Target:  5'- cGCGCCCAGCGC---CGCGGCGCUgGCg -3'
miRNA:   3'- -UGCGGGUCGCGuacGCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 31254 0.7 0.620376
Target:  5'- gGCGCCCGGCGCu--CGCcuucgaccccgaGGCGCUgGCc -3'
miRNA:   3'- -UGCGGGUCGCGuacGCG------------CUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 31327 0.71 0.559203
Target:  5'- cGCGCucgccgCCAGCGCGccgcUGCgGCGGCGCgugGCc -3'
miRNA:   3'- -UGCG------GGUCGCGU----ACG-CGCUGUGaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.