miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 31597 0.7 0.619349
Target:  5'- cGCGCUCGGCGCGcagggcgugcugcUGCucGCGACGCgggaccugGCc -3'
miRNA:   3'- -UGCGGGUCGCGU-------------ACG--CGCUGUGaa------CG- -5'
23711 3' -57.4 NC_005261.1 + 31778 0.73 0.416589
Target:  5'- cGCGCCgCGGUGC-UGCccGCGGCGCagUGCg -3'
miRNA:   3'- -UGCGG-GUCGCGuACG--CGCUGUGa-ACG- -5'
23711 3' -57.4 NC_005261.1 + 31872 0.68 0.681848
Target:  5'- -gGCCCGGCGCcuucGCGCG-CGCcgagGCc -3'
miRNA:   3'- ugCGGGUCGCGua--CGCGCuGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 31941 0.68 0.712142
Target:  5'- cUGCCgCGGCGCcaacGUGCGCuACACggugGCc -3'
miRNA:   3'- uGCGG-GUCGCG----UACGCGcUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 32061 0.71 0.539148
Target:  5'- cAUGgCC-GCGCAgaGCGCGGCGCUgggGCu -3'
miRNA:   3'- -UGCgGGuCGCGUa-CGCGCUGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 32331 0.66 0.807257
Target:  5'- gGCGCCCGGCGUGgccUGgGACGCg--- -3'
miRNA:   3'- -UGCGGGUCGCGUac-GCgCUGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 32362 0.71 0.519344
Target:  5'- -gGCCCgcgggagacgcuGGUGCAgGCGCGGCGCggcgGCg -3'
miRNA:   3'- ugCGGG------------UCGCGUaCGCGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 32527 0.71 0.558195
Target:  5'- cGCGCCCGGCcCcgGCcccggccGCGGCGCggGCc -3'
miRNA:   3'- -UGCGGGUCGcGuaCG-------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 33059 0.67 0.789227
Target:  5'- -gGaCUCGGCGCcgGggaCGCGGCGCUgGCg -3'
miRNA:   3'- ugC-GGGUCGCGuaC---GCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 34024 0.69 0.671655
Target:  5'- gACGUgaucaCCGGCGCG-GCGCGcGCGCUgcccUGCc -3'
miRNA:   3'- -UGCG-----GGUCGCGUaCGCGC-UGUGA----ACG- -5'
23711 3' -57.4 NC_005261.1 + 34362 0.7 0.56931
Target:  5'- -gGCCgGGCGCc-GCGCGGCGCcgcGCg -3'
miRNA:   3'- ugCGGgUCGCGuaCGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 35447 0.71 0.509549
Target:  5'- cCGCCCcGCGgGUcuagGCGCGGCGCgcGCg -3'
miRNA:   3'- uGCGGGuCGCgUA----CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 36154 0.72 0.480653
Target:  5'- cUGCUC-GCGCAUGCGCGGgGCUUu- -3'
miRNA:   3'- uGCGGGuCGCGUACGCGCUgUGAAcg -5'
23711 3' -57.4 NC_005261.1 + 36182 0.78 0.216914
Target:  5'- cCGCCggCAGCGCAUGCGCgcuuaauaaaaacuGAUACUUGUa -3'
miRNA:   3'- uGCGG--GUCGCGUACGCG--------------CUGUGAACG- -5'
23711 3' -57.4 NC_005261.1 + 36619 0.73 0.443421
Target:  5'- uGCGcCCCGGCGCAcaaacgGCGCGAaGCcgGCg -3'
miRNA:   3'- -UGC-GGGUCGCGUa-----CGCGCUgUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 36780 0.66 0.841332
Target:  5'- -gGCCC-GUGCGuUGCGCcGAgACUuUGCg -3'
miRNA:   3'- ugCGGGuCGCGU-ACGCG-CUgUGA-ACG- -5'
23711 3' -57.4 NC_005261.1 + 37001 0.66 0.833082
Target:  5'- -aGCCCGcGgGC-UGCGCGGgGCcaguUUGCg -3'
miRNA:   3'- ugCGGGU-CgCGuACGCGCUgUG----AACG- -5'
23711 3' -57.4 NC_005261.1 + 37155 0.77 0.246865
Target:  5'- -gGCaCCAGCGCucGCGCG-CGCUUGCg -3'
miRNA:   3'- ugCG-GGUCGCGuaCGCGCuGUGAACG- -5'
23711 3' -57.4 NC_005261.1 + 37178 0.69 0.671655
Target:  5'- nCGCCUgGGCGC-UGCugGCGGCGCUgcugGCg -3'
miRNA:   3'- uGCGGG-UCGCGuACG--CGCUGUGAa---CG- -5'
23711 3' -57.4 NC_005261.1 + 37220 0.67 0.751531
Target:  5'- gGCuCCCGcGgGCuUGCGCGGCGCggcGCg -3'
miRNA:   3'- -UGcGGGU-CgCGuACGCGCUGUGaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.