miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 37779 0.67 0.766846
Target:  5'- gGCGCCCcaacggacucccCGCGUGCGUGACGac-GCu -3'
miRNA:   3'- -UGCGGGuc----------GCGUACGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 37906 0.69 0.670634
Target:  5'- cAUGCCCuacGCGCGccaccgcUGCGCGAgUACgaGCg -3'
miRNA:   3'- -UGCGGGu--CGCGU-------ACGCGCU-GUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 38353 0.69 0.658358
Target:  5'- cACGCCCAGCgggccuuuggggcgGCcgGgaaGCGGCACcucgUGCu -3'
miRNA:   3'- -UGCGGGUCG--------------CGuaCg--CGCUGUGa---ACG- -5'
23711 3' -57.4 NC_005261.1 + 38538 0.69 0.630646
Target:  5'- cGCGCCgggcaCAGCGCcgGCGCGcggcCAUgcgGCg -3'
miRNA:   3'- -UGCGG-----GUCGCGuaCGCGCu---GUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 39010 0.69 0.630646
Target:  5'- cGCGCCCAcGCGCAga-GCGucCGCgaGCa -3'
miRNA:   3'- -UGCGGGU-CGCGUacgCGCu-GUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 39552 0.69 0.630646
Target:  5'- -aGCCCcGCGCGcGCGCGGCGgUcUGUc -3'
miRNA:   3'- ugCGGGuCGCGUaCGCGCUGUgA-ACG- -5'
23711 3' -57.4 NC_005261.1 + 39875 0.69 0.671655
Target:  5'- cACGgCCAGCaggccGCGcGCGCGGCugU-GCa -3'
miRNA:   3'- -UGCgGGUCG-----CGUaCGCGCUGugAaCG- -5'
23711 3' -57.4 NC_005261.1 + 41121 0.72 0.461839
Target:  5'- -gGCCCgAGCGCuuccUGCGUGGCGCgcGCc -3'
miRNA:   3'- ugCGGG-UCGCGu---ACGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 42241 0.66 0.829729
Target:  5'- cGCGCgCAGCGCcucgaacugcccGCGCGAgGCggccGCg -3'
miRNA:   3'- -UGCGgGUCGCGua----------CGCGCUgUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 43129 0.66 0.807257
Target:  5'- cGCGCCUAcacaCGCGcGCGCGGC-CU-GCg -3'
miRNA:   3'- -UGCGGGUc---GCGUaCGCGCUGuGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 43580 0.69 0.640917
Target:  5'- gGCGCUUcGC-CGUGCGCGACGCcgucuccgGCg -3'
miRNA:   3'- -UGCGGGuCGcGUACGCGCUGUGaa------CG- -5'
23711 3' -57.4 NC_005261.1 + 43638 0.68 0.712142
Target:  5'- gGCGCCCguguGGCGCG-GCG-GugACgUGCu -3'
miRNA:   3'- -UGCGGG----UCGCGUaCGCgCugUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 44011 0.68 0.702101
Target:  5'- -aGCCCGGCuUcgGCGCGGCGg--GCg -3'
miRNA:   3'- ugCGGGUCGcGuaCGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 44242 0.76 0.278187
Target:  5'- cCGCCCAGCGCGcgGC-CGACGCcgcgGCg -3'
miRNA:   3'- uGCGGGUCGCGUa-CGcGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 45100 0.68 0.702101
Target:  5'- cGCGCCU-GCGCGUGgaGCcgGGCACggGCg -3'
miRNA:   3'- -UGCGGGuCGCGUACg-CG--CUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 45388 0.68 0.732011
Target:  5'- cCGCCCuguucGUGCAgcugucgugccUGCuGCGGCGCcUGCg -3'
miRNA:   3'- uGCGGGu----CGCGU-----------ACG-CGCUGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 45621 0.66 0.807257
Target:  5'- -gGCgCGGCGCG-GCGCGGCggGCccGCg -3'
miRNA:   3'- ugCGgGUCGCGUaCGCGCUG--UGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 45656 0.66 0.807257
Target:  5'- gUGCCCAGCGg--GCGUGAUcaACgcGCg -3'
miRNA:   3'- uGCGGGUCGCguaCGCGCUG--UGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 45961 0.69 0.66143
Target:  5'- gGCGCCguugaGCAUGCGCGcCAgcuCUUGCa -3'
miRNA:   3'- -UGCGGgucg-CGUACGCGCuGU---GAACG- -5'
23711 3' -57.4 NC_005261.1 + 45998 0.66 0.824647
Target:  5'- gGCGCCa--UGUGUGCGCGGCAg--GCg -3'
miRNA:   3'- -UGCGGgucGCGUACGCGCUGUgaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.