miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 46139 0.7 0.59987
Target:  5'- cCGCCCGagaaCGCcgaGCGCGGCACU-GCg -3'
miRNA:   3'- uGCGGGUc---GCGua-CGCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 46492 0.66 0.815166
Target:  5'- gGCGCCCuccgcggGGCGCAgcccgGCGUcGCGCa-GCa -3'
miRNA:   3'- -UGCGGG-------UCGCGUa----CGCGcUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 46568 0.67 0.74182
Target:  5'- aGCGCugcugCgAGCGCGgccucGCGCGACACggccccggGCa -3'
miRNA:   3'- -UGCG-----GgUCGCGUa----CGCGCUGUGaa------CG- -5'
23711 3' -57.4 NC_005261.1 + 46797 0.71 0.559203
Target:  5'- gGCGCCCGucgcggcgcGCGCGgaugGCGCGcgccagGCGCgcgUGCu -3'
miRNA:   3'- -UGCGGGU---------CGCGUa---CGCGC------UGUGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 47066 0.67 0.789227
Target:  5'- -gGCCgAGCGCGUGguaCGCGuGCACgccgaagGCg -3'
miRNA:   3'- ugCGGgUCGCGUAC---GCGC-UGUGaa-----CG- -5'
23711 3' -57.4 NC_005261.1 + 47141 0.66 0.841332
Target:  5'- cGCGCaCAGCGCcgGCGuCGGCg---GCc -3'
miRNA:   3'- -UGCGgGUCGCGuaCGC-GCUGugaaCG- -5'
23711 3' -57.4 NC_005261.1 + 47453 0.73 0.443421
Target:  5'- gGCGCCCGGCccGCuUGCGCgGGgGCUggGCg -3'
miRNA:   3'- -UGCGGGUCG--CGuACGCG-CUgUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 47674 0.7 0.58965
Target:  5'- aGCGCCgAGCGCAgcacgGCcgcccGCGGCGCc-GCg -3'
miRNA:   3'- -UGCGGgUCGCGUa----CG-----CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 47940 0.7 0.579461
Target:  5'- cGCGCgCCGcGCGCGaGCGCGuucACGCU-GCg -3'
miRNA:   3'- -UGCG-GGU-CGCGUaCGCGC---UGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 48600 0.73 0.425423
Target:  5'- cACGCUCAcCGCGUGCGCGGC-CgcGCc -3'
miRNA:   3'- -UGCGGGUcGCGUACGCGCUGuGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 48657 0.69 0.651181
Target:  5'- cCGCCCGGagaGCc-GCGCGGCAacgGCg -3'
miRNA:   3'- uGCGGGUCg--CGuaCGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 48860 0.67 0.74182
Target:  5'- -gGCCCAGCGCccggGCcaugGCGGCGCa-GCc -3'
miRNA:   3'- ugCGGGUCGCGua--CG----CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 49226 0.72 0.474969
Target:  5'- gGCGCCCAGCGCGcGCaggucggccgccgccGCGGCgGCgucgGCg -3'
miRNA:   3'- -UGCGGGUCGCGUaCG---------------CGCUG-UGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 49587 0.68 0.702101
Target:  5'- -gGCUCGGgGC--GCGCGGCGCU-GCu -3'
miRNA:   3'- ugCGGGUCgCGuaCGCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 50026 0.78 0.229511
Target:  5'- gGCGCCCAGcCGCc-GCGCGACGg-UGCa -3'
miRNA:   3'- -UGCGGGUC-GCGuaCGCGCUGUgaACG- -5'
23711 3' -57.4 NC_005261.1 + 50431 0.7 0.620376
Target:  5'- cCGCUCGuGCaGCGUGCGCGugAagcUGCg -3'
miRNA:   3'- uGCGGGU-CG-CGUACGCGCugUga-ACG- -5'
23711 3' -57.4 NC_005261.1 + 50861 0.66 0.833082
Target:  5'- uCGCCCAG-GUcgGCGCcuucgccgcgcuGGCGCUgcuaUGCu -3'
miRNA:   3'- uGCGGGUCgCGuaCGCG------------CUGUGA----ACG- -5'
23711 3' -57.4 NC_005261.1 + 51203 0.67 0.78831
Target:  5'- cACGCCCccgGGCGCGcugcugcUGgGCG-CGCUaGCc -3'
miRNA:   3'- -UGCGGG---UCGCGU-------ACgCGCuGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 52449 0.66 0.83057
Target:  5'- cACGaggucCCCGGCGCGcgucaggaugcgguUGCgGCGGCAUcgGCu -3'
miRNA:   3'- -UGC-----GGGUCGCGU--------------ACG-CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 52965 0.73 0.425423
Target:  5'- aGCGCC--GCGCcgGUGCGGCGCcgGCa -3'
miRNA:   3'- -UGCGGguCGCGuaCGCGCUGUGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.