miRNA display CGI


Results 1 - 20 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 138024 0.69 0.630646
Target:  5'- -aGCCCGGCGCG-GCccgGCGGCGgUgGCg -3'
miRNA:   3'- ugCGGGUCGCGUaCG---CGCUGUgAaCG- -5'
23711 3' -57.4 NC_005261.1 + 137802 0.66 0.841332
Target:  5'- cCGCgCCGGCGCcgccccugGUGCucGCGGgGCUgGCa -3'
miRNA:   3'- uGCG-GGUCGCG--------UACG--CGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 136830 0.67 0.74182
Target:  5'- gGCGCCCccGCGCGUGagguagaGCaugaACUUGCg -3'
miRNA:   3'- -UGCGGGu-CGCGUACg------CGcug-UGAACG- -5'
23711 3' -57.4 NC_005261.1 + 136595 0.8 0.174511
Target:  5'- gACGCCCGGCGCAgcgUGgaGCGGCGCgcGCg -3'
miRNA:   3'- -UGCGGGUCGCGU---ACg-CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 135767 0.7 0.56931
Target:  5'- uGCGCuCCGGCGCAgaGCGCGugcCGCUg-- -3'
miRNA:   3'- -UGCG-GGUCGCGUa-CGCGCu--GUGAacg -5'
23711 3' -57.4 NC_005261.1 + 135631 0.73 0.443421
Target:  5'- gGCGCCCuucauGCGCugcuaccUGCGCgGGCGCggGCg -3'
miRNA:   3'- -UGCGGGu----CGCGu------ACGCG-CUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 135444 0.71 0.509549
Target:  5'- cCGCCCAG-GCG-GCGCGgGCGCU-GCg -3'
miRNA:   3'- uGCGGGUCgCGUaCGCGC-UGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 135095 0.67 0.761137
Target:  5'- -gGCCCGGCgGCGgaGCGCGAgGCggaccccGCg -3'
miRNA:   3'- ugCGGGUCG-CGUa-CGCGCUgUGaa-----CG- -5'
23711 3' -57.4 NC_005261.1 + 135001 0.68 0.712142
Target:  5'- gGCGCCCcuGGCGCG-GCGgGcccGCACgcgGCc -3'
miRNA:   3'- -UGCGGG--UCGCGUaCGCgC---UGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 134357 0.68 0.722116
Target:  5'- cGCGCCgCcGCGCGggGgGCGGCGCcgcugGCg -3'
miRNA:   3'- -UGCGG-GuCGCGUa-CgCGCUGUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 134226 0.71 0.519344
Target:  5'- -gGCCggCAGCGUcgGCGUGGCGCacGCg -3'
miRNA:   3'- ugCGG--GUCGCGuaCGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 134149 0.66 0.797415
Target:  5'- uGCGCCUGGCGCcaccCGgGGCugcugcucccgcuGCUUGCg -3'
miRNA:   3'- -UGCGGGUCGCGuac-GCgCUG-------------UGAACG- -5'
23711 3' -57.4 NC_005261.1 + 134093 0.67 0.789227
Target:  5'- aGCuCUCGGCGCGccgGCGCG-CGCUcGCc -3'
miRNA:   3'- -UGcGGGUCGCGUa--CGCGCuGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 133946 0.7 0.610115
Target:  5'- uGCGCCaggcgCGGCGCAUGUuCGGCcUUUGCc -3'
miRNA:   3'- -UGCGG-----GUCGCGUACGcGCUGuGAACG- -5'
23711 3' -57.4 NC_005261.1 + 133873 0.67 0.751531
Target:  5'- cGCGCCUAccuguggucuGCGCAaGCccGCGGCGCgcUGCu -3'
miRNA:   3'- -UGCGGGU----------CGCGUaCG--CGCUGUGa-ACG- -5'
23711 3' -57.4 NC_005261.1 + 133827 0.67 0.74182
Target:  5'- gGCGCUgcgCGGcCGCGUGCGCGccguggccgGCGCgcGCg -3'
miRNA:   3'- -UGCGG---GUC-GCGUACGCGC---------UGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 133636 0.71 0.539148
Target:  5'- cGCGCUCGccGCGCcgcUGCGCGAgCGCUgcgUGCu -3'
miRNA:   3'- -UGCGGGU--CGCGu--ACGCGCU-GUGA---ACG- -5'
23711 3' -57.4 NC_005261.1 + 133326 0.69 0.66143
Target:  5'- cGCGCagcuccugCCGGCacGCGcGCGCGGCGCUgccGCg -3'
miRNA:   3'- -UGCG--------GGUCG--CGUaCGCGCUGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 133035 0.69 0.640917
Target:  5'- cGCGCCaccGCGCAcgcacgugcUGCGCGGCGuugGCg -3'
miRNA:   3'- -UGCGGgu-CGCGU---------ACGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 132632 0.67 0.751531
Target:  5'- gGCGCCgAGgaCGCggGCGCGGCGgccCUaGCg -3'
miRNA:   3'- -UGCGGgUC--GCGuaCGCGCUGU---GAaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.