miRNA display CGI


Results 21 - 40 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 132539 0.66 0.798318
Target:  5'- cGCGCCCucgcGCGCGaGgGCGAgGCgcaguacgGCu -3'
miRNA:   3'- -UGCGGGu---CGCGUaCgCGCUgUGaa------CG- -5'
23711 3' -57.4 NC_005261.1 + 132361 0.67 0.761137
Target:  5'- cCGCCgCGGCGCGcuCGCcGCGCUcGCg -3'
miRNA:   3'- uGCGG-GUCGCGUacGCGcUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 131800 0.69 0.66143
Target:  5'- cGCGCCCGccGCGCcugacgGCGCGccgcCGCUUGa -3'
miRNA:   3'- -UGCGGGU--CGCGua----CGCGCu---GUGAACg -5'
23711 3' -57.4 NC_005261.1 + 131758 0.72 0.452579
Target:  5'- cACGCCggcCGGCGCGgcggGCGCGcCGCUggGCc -3'
miRNA:   3'- -UGCGG---GUCGCGUa---CGCGCuGUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 131597 0.66 0.798318
Target:  5'- -gGCCUAcGCGCGcGCGCG-CACguacGCg -3'
miRNA:   3'- ugCGGGU-CGCGUaCGCGCuGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 131190 0.66 0.807257
Target:  5'- uACGCCCgcGGCGCGgucGCcGCcGGCGCgcccGCg -3'
miRNA:   3'- -UGCGGG--UCGCGUa--CG-CG-CUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 130621 0.7 0.579461
Target:  5'- uGCGCCuucaaCAGCGC--GCGgGGCGCgcgUGCg -3'
miRNA:   3'- -UGCGG-----GUCGCGuaCGCgCUGUGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 129834 0.69 0.651181
Target:  5'- gAUGCCCAGCGCGcGCuccagcaccGCGACGucgGCc -3'
miRNA:   3'- -UGCGGGUCGCGUaCG---------CGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 129583 0.67 0.74182
Target:  5'- gGCGgCC-GCGCGccGCGgGACACgcgGCa -3'
miRNA:   3'- -UGCgGGuCGCGUa-CGCgCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 129308 0.75 0.319851
Target:  5'- gGCGCCCcGCGCcUGCGCuGGCGCc-GCg -3'
miRNA:   3'- -UGCGGGuCGCGuACGCG-CUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 129193 0.66 0.824647
Target:  5'- -aGgCCAGCGCGUgGCGCaGCuGCUucUGCu -3'
miRNA:   3'- ugCgGGUCGCGUA-CGCGcUG-UGA--ACG- -5'
23711 3' -57.4 NC_005261.1 + 128797 0.69 0.640917
Target:  5'- gGCGCCCGG-GCccGCGgCGGgGCUcGCg -3'
miRNA:   3'- -UGCGGGUCgCGuaCGC-GCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 127778 0.66 0.807257
Target:  5'- gACGCCCGGCuGCucgagcgGCGggcCGGCGCcgcgGCg -3'
miRNA:   3'- -UGCGGGUCG-CGua-----CGC---GCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 127693 0.68 0.732011
Target:  5'- cUGCCCcggcGGCGCcggaggagcUGCGCGugGCcUGCc -3'
miRNA:   3'- uGCGGG----UCGCGu--------ACGCGCugUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 126951 0.72 0.490199
Target:  5'- gGCGCCgGGCGCggGgGCGGCAgc-GCg -3'
miRNA:   3'- -UGCGGgUCGCGuaCgCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 126128 0.7 0.56931
Target:  5'- -aGCCCAGCGCu--CGCGGCAa--GCu -3'
miRNA:   3'- ugCGGGUCGCGuacGCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 124620 0.73 0.425423
Target:  5'- cGCGUCCAGCgGCAucUGCGCGaagaagGCGCUggGCc -3'
miRNA:   3'- -UGCGGGUCG-CGU--ACGCGC------UGUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 124326 0.67 0.74182
Target:  5'- cGCGUCCgccaaaaagagcAGCGCcucaGUGgGCGGCAUUgcUGCg -3'
miRNA:   3'- -UGCGGG------------UCGCG----UACgCGCUGUGA--ACG- -5'
23711 3' -57.4 NC_005261.1 + 124270 0.66 0.824647
Target:  5'- cCGCCCGcGCGCcccgGcCGCGACAaaaaaugGCa -3'
miRNA:   3'- uGCGGGU-CGCGua--C-GCGCUGUgaa----CG- -5'
23711 3' -57.4 NC_005261.1 + 124200 0.68 0.691999
Target:  5'- cGCGUCCGGUgGCGUGaacuGCGugGCUgccaGCa -3'
miRNA:   3'- -UGCGGGUCG-CGUACg---CGCugUGAa---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.