miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 124084 0.73 0.443421
Target:  5'- -aGCCCGGCGCccGCGUaGCGCgcGCa -3'
miRNA:   3'- ugCGGGUCGCGuaCGCGcUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 123693 0.69 0.671655
Target:  5'- gGCGCUCAGCGUggGCcGCG-UACUcgGCc -3'
miRNA:   3'- -UGCGGGUCGCGuaCG-CGCuGUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 123501 0.69 0.671655
Target:  5'- gGCGCaCCAGCGgcaGUGcCGCGucCGCUaGCa -3'
miRNA:   3'- -UGCG-GGUCGCg--UAC-GCGCu-GUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 122645 0.66 0.816036
Target:  5'- -gGCCCGGCGCGcguacguggGCGCGAagaGCa--- -3'
miRNA:   3'- ugCGGGUCGCGUa--------CGCGCUg--UGaacg -5'
23711 3' -57.4 NC_005261.1 + 122315 0.7 0.620376
Target:  5'- gACGCCCGG-GCcgGCggucagGUGGCGCUcGCa -3'
miRNA:   3'- -UGCGGGUCgCGuaCG------CGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 121787 0.69 0.650155
Target:  5'- cGCGgCCGGCgggcuggGCAggggGCGCGugGCUggGCu -3'
miRNA:   3'- -UGCgGGUCG-------CGUa---CGCGCugUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 121686 0.67 0.789227
Target:  5'- gGCGCCCuccagguuGCGCAUggagGCGUaGACGCcgacgGCg -3'
miRNA:   3'- -UGCGGGu-------CGCGUA----CGCG-CUGUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 121382 0.67 0.751531
Target:  5'- gGCGCCC--CGCG-GCgGCGGCGCcUGCc -3'
miRNA:   3'- -UGCGGGucGCGUaCG-CGCUGUGaACG- -5'
23711 3' -57.4 NC_005261.1 + 121125 0.67 0.751531
Target:  5'- gGCGCggaGGCGCggGCGCGAgCGCgaGUa -3'
miRNA:   3'- -UGCGgg-UCGCGuaCGCGCU-GUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 121064 0.71 0.529212
Target:  5'- gGCGCgCGGUGU--GCGCGGCGCcgGCg -3'
miRNA:   3'- -UGCGgGUCGCGuaCGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 120962 0.7 0.59987
Target:  5'- cGCGCCCcgcggGGCGCGUGC-CGcCGCagGCc -3'
miRNA:   3'- -UGCGGG-----UCGCGUACGcGCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 120647 0.67 0.751531
Target:  5'- gUGCCUgcGGCGCAagGCGCgGGCGCgccUGUg -3'
miRNA:   3'- uGCGGG--UCGCGUa-CGCG-CUGUGa--ACG- -5'
23711 3' -57.4 NC_005261.1 + 120414 0.7 0.614218
Target:  5'- uGCGCUgAGCGgccugggcuggugaaCAUGCGCGGCG--UGCg -3'
miRNA:   3'- -UGCGGgUCGC---------------GUACGCGCUGUgaACG- -5'
23711 3' -57.4 NC_005261.1 + 120282 0.69 0.66143
Target:  5'- cCGCCCGagcuGCGCGUGUucuucgagggcgGCGAgGCUgucUGCg -3'
miRNA:   3'- uGCGGGU----CGCGUACG------------CGCUgUGA---ACG- -5'
23711 3' -57.4 NC_005261.1 + 119885 0.68 0.702101
Target:  5'- -aGCCgAGgGCGUGUacaccuggcgccGCGACGCggGCg -3'
miRNA:   3'- ugCGGgUCgCGUACG------------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 119053 0.68 0.732011
Target:  5'- cGCGCCCGcggccGCGCGUGUGCuuucGugGCccggGCc -3'
miRNA:   3'- -UGCGGGU-----CGCGUACGCG----CugUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 118918 0.73 0.425423
Target:  5'- -gGUCCGGCGCcgcggGCGCGGCGCcgcGCg -3'
miRNA:   3'- ugCGGGUCGCGua---CGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 118814 0.71 0.549147
Target:  5'- gGCGUCU-GCGCccuggGCGCGGCACUgccGCu -3'
miRNA:   3'- -UGCGGGuCGCGua---CGCGCUGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 118664 0.66 0.833082
Target:  5'- cGCGCUCGGgGCugagggcgGCG-GGCGCUgGCg -3'
miRNA:   3'- -UGCGGGUCgCGua------CGCgCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 118569 0.68 0.691999
Target:  5'- gUGCCC-GCGCGcGCGgCGGCGCgcGCc -3'
miRNA:   3'- uGCGGGuCGCGUaCGC-GCUGUGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.