miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 118447 0.68 0.712142
Target:  5'- cCGCCgCGGCGCuagaa-GACACUUGCc -3'
miRNA:   3'- uGCGG-GUCGCGuacgcgCUGUGAACG- -5'
23711 3' -57.4 NC_005261.1 + 118367 0.68 0.722116
Target:  5'- -gGCCgGGCGCugggGCGCGcggcccgagGCGCUgGCg -3'
miRNA:   3'- ugCGGgUCGCGua--CGCGC---------UGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 118260 0.71 0.529212
Target:  5'- gGCGUgCCGGUGCAcUGCGCG-CACUUcGUg -3'
miRNA:   3'- -UGCG-GGUCGCGU-ACGCGCuGUGAA-CG- -5'
23711 3' -57.4 NC_005261.1 + 118202 0.71 0.549147
Target:  5'- cGCGCCUgccGCGC-UGCGCGggGCGCUgacgGCc -3'
miRNA:   3'- -UGCGGGu--CGCGuACGCGC--UGUGAa---CG- -5'
23711 3' -57.4 NC_005261.1 + 118049 0.66 0.833082
Target:  5'- gACGCCC-GCGCuggcgGcCGCGGCAgcgGCc -3'
miRNA:   3'- -UGCGGGuCGCGua---C-GCGCUGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 117676 0.67 0.751531
Target:  5'- cGCGCCCGGCcggGCccGCGgCGAgGCcgGCc -3'
miRNA:   3'- -UGCGGGUCG---CGuaCGC-GCUgUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 117309 0.68 0.722116
Target:  5'- -aGCCCAGCcCcgGCGCgGGCAgcaagcgcaucCUUGCc -3'
miRNA:   3'- ugCGGGUCGcGuaCGCG-CUGU-----------GAACG- -5'
23711 3' -57.4 NC_005261.1 + 116268 0.68 0.722116
Target:  5'- cACGCCCGGCgGCGU-CGUGAUgGCgucgUGCu -3'
miRNA:   3'- -UGCGGGUCG-CGUAcGCGCUG-UGa---ACG- -5'
23711 3' -57.4 NC_005261.1 + 115304 0.66 0.838877
Target:  5'- aACGCgUCGGCGCAcgucUGCGCGAUcgggggguaccgggACgUGUa -3'
miRNA:   3'- -UGCG-GGUCGCGU----ACGCGCUG--------------UGaACG- -5'
23711 3' -57.4 NC_005261.1 + 115267 0.67 0.789227
Target:  5'- cACGCCgCcGCGCGUcUGgGACGCggGCa -3'
miRNA:   3'- -UGCGG-GuCGCGUAcGCgCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 115201 0.73 0.416589
Target:  5'- -gGCCCAGCGCccGUGCguccGCGGCGCgaucgUGUc -3'
miRNA:   3'- ugCGGGUCGCG--UACG----CGCUGUGa----ACG- -5'
23711 3' -57.4 NC_005261.1 + 113540 0.66 0.807257
Target:  5'- -gGCUCGGgGcCGUGCGCG-CGCUggaccGCg -3'
miRNA:   3'- ugCGGGUCgC-GUACGCGCuGUGAa----CG- -5'
23711 3' -57.4 NC_005261.1 + 113480 0.67 0.751531
Target:  5'- uGCGCCCGaaccuGcCGCugAUGCGCG-CGCU-GCg -3'
miRNA:   3'- -UGCGGGU-----C-GCG--UACGCGCuGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 113319 0.71 0.539148
Target:  5'- -gGCCCGGCuGCGcgagaaggucGCGCGGCACggGCu -3'
miRNA:   3'- ugCGGGUCG-CGUa---------CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 113043 0.66 0.816036
Target:  5'- cGCGCgCGGCGUG-GCGCGccacCGCUcGCu -3'
miRNA:   3'- -UGCGgGUCGCGUaCGCGCu---GUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 112465 0.66 0.798318
Target:  5'- -gGCCguGCuaaaCAUGCGCGGCA--UGCu -3'
miRNA:   3'- ugCGGguCGc---GUACGCGCUGUgaACG- -5'
23711 3' -57.4 NC_005261.1 + 111843 0.67 0.761137
Target:  5'- uCGCggAGCGCGUGCGCGcCAaccGCg -3'
miRNA:   3'- uGCGggUCGCGUACGCGCuGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 111779 0.67 0.751531
Target:  5'- cGCGCCCGGgGUGUGCcccugGACGCcugGCu -3'
miRNA:   3'- -UGCGGGUCgCGUACGcg---CUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 110332 0.66 0.841332
Target:  5'- cCGCCgCGGaCGCGcUGCGCGcGCACcUGa -3'
miRNA:   3'- uGCGG-GUC-GCGU-ACGCGC-UGUGaACg -5'
23711 3' -57.4 NC_005261.1 + 110229 0.71 0.519344
Target:  5'- gACGCcuCCAGCGUGggcgGCGCGGCGCccgggggGCu -3'
miRNA:   3'- -UGCG--GGUCGCGUa---CGCGCUGUGaa-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.