miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 110107 0.67 0.751531
Target:  5'- aGCGcCCCGGCGCGccCGUccuGACGCUgacGCa -3'
miRNA:   3'- -UGC-GGGUCGCGUacGCG---CUGUGAa--CG- -5'
23711 3' -57.4 NC_005261.1 + 109466 0.67 0.770628
Target:  5'- cCGCUUcGCGCGUGCGCGcC-CgaGCg -3'
miRNA:   3'- uGCGGGuCGCGUACGCGCuGuGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 109206 0.71 0.549147
Target:  5'- uGCGCa-GGCGCucguagGCGCGGCACgccGCg -3'
miRNA:   3'- -UGCGggUCGCGua----CGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 108747 0.7 0.58965
Target:  5'- gGCGCCgCGGCGUc--CGCGGCGCgccGCg -3'
miRNA:   3'- -UGCGG-GUCGCGuacGCGCUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 108566 0.67 0.761137
Target:  5'- cACGUCguGCGaCGUGCGCG-CGaagGCg -3'
miRNA:   3'- -UGCGGguCGC-GUACGCGCuGUgaaCG- -5'
23711 3' -57.4 NC_005261.1 + 108485 0.67 0.779995
Target:  5'- gGCGCgCAcGCGCGc-CGCGACGCUacccGCg -3'
miRNA:   3'- -UGCGgGU-CGCGUacGCGCUGUGAa---CG- -5'
23711 3' -57.4 NC_005261.1 + 108411 0.66 0.824647
Target:  5'- cGCGCCaccGCGCcUGCGUG-CACg-GCa -3'
miRNA:   3'- -UGCGGgu-CGCGuACGCGCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 108157 0.66 0.807257
Target:  5'- cCGCCugCAGCGCGUccgccagggcGCGCGGC-CgcgGCu -3'
miRNA:   3'- uGCGG--GUCGCGUA----------CGCGCUGuGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 107872 0.67 0.761137
Target:  5'- cCGCCCGcGCGCucgcgccCGCGGCccGCUUGUc -3'
miRNA:   3'- uGCGGGU-CGCGuac----GCGCUG--UGAACG- -5'
23711 3' -57.4 NC_005261.1 + 107760 0.66 0.841332
Target:  5'- cACGcCCCAGCGCu--CGCuGGCGCgcgGUc -3'
miRNA:   3'- -UGC-GGGUCGCGuacGCG-CUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 107644 0.7 0.59987
Target:  5'- aGCGCCC-GCGC-UGCGCG-CGCa--- -3'
miRNA:   3'- -UGCGGGuCGCGuACGCGCuGUGaacg -5'
23711 3' -57.4 NC_005261.1 + 107248 0.68 0.681848
Target:  5'- cCGCCCAcccGCGgGcGCGCGgGCACggGCg -3'
miRNA:   3'- uGCGGGU---CGCgUaCGCGC-UGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 107119 0.69 0.651181
Target:  5'- cGCGCCaccGCGCcgGCGaCGGCGCccacgGCc -3'
miRNA:   3'- -UGCGGgu-CGCGuaCGC-GCUGUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 106970 0.69 0.640917
Target:  5'- cCGCCuCGGCGCGcGCGCcGCGCaccGCg -3'
miRNA:   3'- uGCGG-GUCGCGUaCGCGcUGUGaa-CG- -5'
23711 3' -57.4 NC_005261.1 + 106912 0.74 0.374152
Target:  5'- cGCGCCgCGGCGCGcUGCagggccgccaGCGACACgcGCa -3'
miRNA:   3'- -UGCGG-GUCGCGU-ACG----------CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 106784 0.7 0.58965
Target:  5'- -aGCCCAGCGCcgucUGCGCccGCACcaGCg -3'
miRNA:   3'- ugCGGGUCGCGu---ACGCGc-UGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 106705 0.67 0.770628
Target:  5'- cGCGuCCCAGCGC-UGCaggaaGCGGCccACcucgUGCa -3'
miRNA:   3'- -UGC-GGGUCGCGuACG-----CGCUG--UGa---ACG- -5'
23711 3' -57.4 NC_005261.1 + 106555 0.68 0.702101
Target:  5'- cGCGUCCGG-GCcgGCGCG-CGCcgGCc -3'
miRNA:   3'- -UGCGGGUCgCGuaCGCGCuGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 106391 0.7 0.610115
Target:  5'- cCGCCgcuguCGGCGaCAUccGCGCGGCGCU-GCa -3'
miRNA:   3'- uGCGG-----GUCGC-GUA--CGCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 106218 0.66 0.824647
Target:  5'- aGCGCCCgcGGcCGCcugGCGCGGC-CgccGCg -3'
miRNA:   3'- -UGCGGG--UC-GCGua-CGCGCUGuGaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.