miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 3' -57.4 NC_005261.1 + 137802 0.66 0.841332
Target:  5'- cCGCgCCGGCGCcgccccugGUGCucGCGGgGCUgGCa -3'
miRNA:   3'- uGCG-GGUCGCG--------UACG--CGCUgUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 44242 0.76 0.278187
Target:  5'- cCGCCCAGCGCGcgGC-CGACGCcgcgGCg -3'
miRNA:   3'- uGCGGGUCGCGUa-CGcGCUGUGaa--CG- -5'
23711 3' -57.4 NC_005261.1 + 75574 0.76 0.284819
Target:  5'- gGCGCUgGGCgGCG-GCGCGGCGCUcGCg -3'
miRNA:   3'- -UGCGGgUCG-CGUaCGCGCUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 104205 0.76 0.291575
Target:  5'- gGCGUCCAgGCGCucgcGCGCGGCGCgcaccgUGCc -3'
miRNA:   3'- -UGCGGGU-CGCGua--CGCGCUGUGa-----ACG- -5'
23711 3' -57.4 NC_005261.1 + 70694 0.76 0.305462
Target:  5'- gGCGUCCAGCGCGgcccGCGCgGGCACg-GCc -3'
miRNA:   3'- -UGCGGGUCGCGUa---CGCG-CUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 63016 0.76 0.305462
Target:  5'- cGCGCCC-GCGCggGCGCcGGCGCccGCg -3'
miRNA:   3'- -UGCGGGuCGCGuaCGCG-CUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 62695 0.75 0.312594
Target:  5'- cACGCgCCGGCGCA-GCGUGGCGaggaacaccacCUUGCc -3'
miRNA:   3'- -UGCG-GGUCGCGUaCGCGCUGU-----------GAACG- -5'
23711 3' -57.4 NC_005261.1 + 129308 0.75 0.319851
Target:  5'- gGCGCCCcGCGCcUGCGCuGGCGCc-GCg -3'
miRNA:   3'- -UGCGGGuCGCGuACGCG-CUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 4043 0.75 0.319851
Target:  5'- aGCGCCCacAGCGCGuucUGCGCGGCcaugGCg -3'
miRNA:   3'- -UGCGGG--UCGCGU---ACGCGCUGugaaCG- -5'
23711 3' -57.4 NC_005261.1 + 37155 0.77 0.246865
Target:  5'- -gGCaCCAGCGCucGCGCG-CGCUUGCg -3'
miRNA:   3'- ugCG-GGUCGCGuaCGCGCuGUGAACG- -5'
23711 3' -57.4 NC_005261.1 + 50026 0.78 0.229511
Target:  5'- gGCGCCCAGcCGCc-GCGCGACGg-UGCa -3'
miRNA:   3'- -UGCGGGUC-GCGuaCGCGCUGUgaACG- -5'
23711 3' -57.4 NC_005261.1 + 100980 0.78 0.22396
Target:  5'- gGCGCCCAGCGCGU-CGCcGCGCUccGCc -3'
miRNA:   3'- -UGCGGGUCGCGUAcGCGcUGUGAa-CG- -5'
23711 3' -57.4 NC_005261.1 + 105970 0.81 0.14592
Target:  5'- gGCGCCCAGCGCG-GCGuCGACGCcgcccGCg -3'
miRNA:   3'- -UGCGGGUCGCGUaCGC-GCUGUGaa---CG- -5'
23711 3' -57.4 NC_005261.1 + 136595 0.8 0.174511
Target:  5'- gACGCCCGGCGCAgcgUGgaGCGGCGCgcGCg -3'
miRNA:   3'- -UGCGGGUCGCGU---ACg-CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 29329 0.8 0.176287
Target:  5'- cCGCCCGGcCGCGUGCGCuucggcggcgcgggcGACACUcGCg -3'
miRNA:   3'- uGCGGGUC-GCGUACGCG---------------CUGUGAaCG- -5'
23711 3' -57.4 NC_005261.1 + 3545 0.79 0.197892
Target:  5'- gGCGCgCAGCGCGgcggGCGCGGCGCc-GCu -3'
miRNA:   3'- -UGCGgGUCGCGUa---CGCGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 98286 0.79 0.197892
Target:  5'- gACGCCCGGCGCGUcCGCGGC-CUcggggGCg -3'
miRNA:   3'- -UGCGGGUCGCGUAcGCGCUGuGAa----CG- -5'
23711 3' -57.4 NC_005261.1 + 73352 0.78 0.213199
Target:  5'- cCGCCCGGCGCcgGCucagGCGGCGCcaGCa -3'
miRNA:   3'- uGCGGGUCGCGuaCG----CGCUGUGaaCG- -5'
23711 3' -57.4 NC_005261.1 + 36182 0.78 0.216914
Target:  5'- cCGCCggCAGCGCAUGCGCgcuuaauaaaaacuGAUACUUGUa -3'
miRNA:   3'- uGCGG--GUCGCGUACGCG--------------CUGUGAACG- -5'
23711 3' -57.4 NC_005261.1 + 89102 0.78 0.218523
Target:  5'- gGCGCgCUGGCGCGcGCGUGGCACU-GCg -3'
miRNA:   3'- -UGCG-GGUCGCGUaCGCGCUGUGAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.