Results 81 - 100 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23711 | 3' | -57.4 | NC_005261.1 | + | 118918 | 0.73 | 0.425423 |
Target: 5'- -gGUCCGGCGCcgcggGCGCGGCGCcgcGCg -3' miRNA: 3'- ugCGGGUCGCGua---CGCGCUGUGaa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 124620 | 0.73 | 0.425423 |
Target: 5'- cGCGUCCAGCgGCAucUGCGCGaagaagGCGCUggGCc -3' miRNA: 3'- -UGCGGGUCG-CGU--ACGCGC------UGUGAa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 52965 | 0.73 | 0.425423 |
Target: 5'- aGCGCC--GCGCcgGUGCGGCGCcgGCa -3' miRNA: 3'- -UGCGGguCGCGuaCGCGCUGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 84968 | 0.73 | 0.425423 |
Target: 5'- gGCGUCgGGCGCGUcCGCGAUGCgccgGCg -3' miRNA: 3'- -UGCGGgUCGCGUAcGCGCUGUGaa--CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 100734 | 0.73 | 0.425423 |
Target: 5'- cGCGCgCGcGCGCGgcggcGCGCGGCACgaGCu -3' miRNA: 3'- -UGCGgGU-CGCGUa----CGCGCUGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 1893 | 0.73 | 0.428988 |
Target: 5'- cGCGCgCCAGCGCgcgccgcucaggccaGcGCGCGGCGCacUGCg -3' miRNA: 3'- -UGCG-GGUCGCG---------------UaCGCGCUGUGa-ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 30170 | 0.73 | 0.431673 |
Target: 5'- cGCGCCCGccGCGC-UGCGCGccgaggcggccgccGCGCUggagGCg -3' miRNA: 3'- -UGCGGGU--CGCGuACGCGC--------------UGUGAa---CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 31778 | 0.73 | 0.416589 |
Target: 5'- cGCGCCgCGGUGC-UGCccGCGGCGCagUGCg -3' miRNA: 3'- -UGCGG-GUCGCGuACG--CGCUGUGa-ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 20456 | 0.73 | 0.416589 |
Target: 5'- gUGCCC-GCGCggGUGUGGCGCUuccuUGCg -3' miRNA: 3'- uGCGGGuCGCGuaCGCGCUGUGA----ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 115201 | 0.73 | 0.416589 |
Target: 5'- -gGCCCAGCGCccGUGCguccGCGGCGCgaucgUGUc -3' miRNA: 3'- ugCGGGUCGCG--UACG----CGCUGUGa----ACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 74082 | 0.74 | 0.358017 |
Target: 5'- -gGCCCGGCuuGUGCGCGAC-CUcGCc -3' miRNA: 3'- ugCGGGUCGcgUACGCGCUGuGAaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 99344 | 0.74 | 0.358017 |
Target: 5'- cGCGCCCAGCaGCA-GCGCG-CACgUGa -3' miRNA: 3'- -UGCGGGUCG-CGUaCGCGCuGUGaACg -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 95904 | 0.74 | 0.358017 |
Target: 5'- cGCGCCC-GCGCG-GCGCGcuCACUcGCg -3' miRNA: 3'- -UGCGGGuCGCGUaCGCGCu-GUGAaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 92582 | 0.74 | 0.366023 |
Target: 5'- cGCGCCCAcGCGCGaGCGCaGcCGCUcGCg -3' miRNA: 3'- -UGCGGGU-CGCGUaCGCG-CuGUGAaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 105587 | 0.74 | 0.366023 |
Target: 5'- -gGCCUcggGGCGCGUGCGCGcgacgaACGCcUGCg -3' miRNA: 3'- ugCGGG---UCGCGUACGCGC------UGUGaACG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 71948 | 0.74 | 0.374152 |
Target: 5'- cGCGCCCcacuGGCGUcgGCGCGggGCGCggaGCg -3' miRNA: 3'- -UGCGGG----UCGCGuaCGCGC--UGUGaa-CG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 106912 | 0.74 | 0.374152 |
Target: 5'- cGCGCCgCGGCGCGcUGCagggccgccaGCGACACgcGCa -3' miRNA: 3'- -UGCGG-GUCGCGU-ACG----------CGCUGUGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 90407 | 0.74 | 0.390772 |
Target: 5'- gGCGCCCGGCGCGgacuaCGCGACguucgacguggGCggGCg -3' miRNA: 3'- -UGCGGGUCGCGUac---GCGCUG-----------UGaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 29201 | 0.74 | 0.399261 |
Target: 5'- gGCGCCC-GCGCGggcGCGCGACugggGCc -3' miRNA: 3'- -UGCGGGuCGCGUa--CGCGCUGugaaCG- -5' |
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23711 | 3' | -57.4 | NC_005261.1 | + | 62879 | 0.73 | 0.407867 |
Target: 5'- uAUGCgCGGCGCAgcccGCGCGAgGCgggGCg -3' miRNA: 3'- -UGCGgGUCGCGUa---CGCGCUgUGaa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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